miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30804 3' -58.1 NC_006552.1 + 6440 1.08 0.000729
Target:  5'- cCGCGCCCGGCGACAUCUCCAGGAUACc -3'
miRNA:   3'- -GCGCGGGCCGCUGUAGAGGUCCUAUG- -5'
30804 3' -58.1 NC_006552.1 + 56819 0.73 0.237717
Target:  5'- gCGCGCCCGGCGgaugguuguccGCAgcuUCCAGGGa-- -3'
miRNA:   3'- -GCGCGGGCCGC-----------UGUag-AGGUCCUaug -5'
30804 3' -58.1 NC_006552.1 + 61507 0.73 0.237717
Target:  5'- gCGCGCCCGGgccgaguaCGGCGUCgaucaCCAGGAc-- -3'
miRNA:   3'- -GCGCGGGCC--------GCUGUAGa----GGUCCUaug -5'
30804 3' -58.1 NC_006552.1 + 31986 0.7 0.367217
Target:  5'- gGUGCUCGGCGugAaUCUCC-GGcUGCg -3'
miRNA:   3'- gCGCGGGCCGCugU-AGAGGuCCuAUG- -5'
30804 3' -58.1 NC_006552.1 + 1918 0.69 0.429189
Target:  5'- aCGUGCUcgaCGGCGGCGUCguugUCGGGAg-- -3'
miRNA:   3'- -GCGCGG---GCCGCUGUAGa---GGUCCUaug -5'
30804 3' -58.1 NC_006552.1 + 52951 0.69 0.429189
Target:  5'- gGCGCCCGccgccgguGCGGCA--UCCGGG-UGCg -3'
miRNA:   3'- gCGCGGGC--------CGCUGUagAGGUCCuAUG- -5'
30804 3' -58.1 NC_006552.1 + 12878 0.69 0.45757
Target:  5'- uGCGCCuCGGCGACcUCggCGGcGUGCg -3'
miRNA:   3'- gCGCGG-GCCGCUGuAGagGUCcUAUG- -5'
30804 3' -58.1 NC_006552.1 + 32967 0.68 0.50597
Target:  5'- aCGCGCgCGuCGGCGUCcuggcucccagcgUCCGGGAUGu -3'
miRNA:   3'- -GCGCGgGCcGCUGUAG-------------AGGUCCUAUg -5'
30804 3' -58.1 NC_006552.1 + 15797 0.68 0.506981
Target:  5'- uCGCGCUCGGCGauuuucuucGCGUCccaUCCAGuGGcACg -3'
miRNA:   3'- -GCGCGGGCCGC---------UGUAG---AGGUC-CUaUG- -5'
30804 3' -58.1 NC_006552.1 + 25896 0.68 0.506981
Target:  5'- gGCGaCCGGCGAgccaUCCGGuGAUGCg -3'
miRNA:   3'- gCGCgGGCCGCUguagAGGUC-CUAUG- -5'
30804 3' -58.1 NC_006552.1 + 60835 0.67 0.558525
Target:  5'- gGCgaGCCCGGCGAUcggUUguGGGUGCg -3'
miRNA:   3'- gCG--CGGGCCGCUGuagAGguCCUAUG- -5'
30804 3' -58.1 NC_006552.1 + 39604 0.67 0.569026
Target:  5'- aGCGCCgGGcCGAUcagGUCUUCcacugcgggcGGGAUGCc -3'
miRNA:   3'- gCGCGGgCC-GCUG---UAGAGG----------UCCUAUG- -5'
30804 3' -58.1 NC_006552.1 + 54257 0.66 0.579576
Target:  5'- gCGCGCCCuGCG-CcUC-CCAGGAg-- -3'
miRNA:   3'- -GCGCGGGcCGCuGuAGaGGUCCUaug -5'
30804 3' -58.1 NC_006552.1 + 26513 0.66 0.632778
Target:  5'- gGCGCCUGccaccagcaGCGGCGgcgCCGGGGUGu -3'
miRNA:   3'- gCGCGGGC---------CGCUGUagaGGUCCUAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.