miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30804 5' -55.1 NC_006552.1 + 6477 1.13 0.000637
Target:  5'- aUCACCUCCCAGCACCUUGCGAGUACCa -3'
miRNA:   3'- -AGUGGAGGGUCGUGGAACGCUCAUGG- -5'
30804 5' -55.1 NC_006552.1 + 17013 0.76 0.261565
Target:  5'- uUCGCCUCCCGGgGCCggaaGCcGAGcaUGCCg -3'
miRNA:   3'- -AGUGGAGGGUCgUGGaa--CG-CUC--AUGG- -5'
30804 5' -55.1 NC_006552.1 + 20619 0.74 0.319113
Target:  5'- cCGCCUCCU-GCACCgcGCGGGUgguuucGCCa -3'
miRNA:   3'- aGUGGAGGGuCGUGGaaCGCUCA------UGG- -5'
30804 5' -55.1 NC_006552.1 + 32609 0.7 0.515563
Target:  5'- cCACCUCCCGGUgcagaGCCgauaggucuuccuccUUGCGAGcGCg -3'
miRNA:   3'- aGUGGAGGGUCG-----UGG---------------AACGCUCaUGg -5'
30804 5' -55.1 NC_006552.1 + 35538 0.7 0.521822
Target:  5'- cCGUCUUCCAGCACCUUGgCGA-UGCUc -3'
miRNA:   3'- aGUGGAGGGUCGUGGAAC-GCUcAUGG- -5'
30804 5' -55.1 NC_006552.1 + 55300 0.7 0.521822
Target:  5'- -gGCCUaCCCguucAGCGgCUggcucgGCGAGUACCu -3'
miRNA:   3'- agUGGA-GGG----UCGUgGAa-----CGCUCAUGG- -5'
30804 5' -55.1 NC_006552.1 + 14117 0.7 0.553528
Target:  5'- gUCGCgCgcaUCCGGCGCCgucaUGUGAGUGCg -3'
miRNA:   3'- -AGUG-Ga--GGGUCGUGGa---ACGCUCAUGg -5'
30804 5' -55.1 NC_006552.1 + 6975 0.69 0.564228
Target:  5'- aCGCC-CCCAGCgauuuugcugGCCUUG-GAGUAUa -3'
miRNA:   3'- aGUGGaGGGUCG----------UGGAACgCUCAUGg -5'
30804 5' -55.1 NC_006552.1 + 56016 0.69 0.59662
Target:  5'- aCACCUCCuCGGCACCaaggUG-GAGUucgACUc -3'
miRNA:   3'- aGUGGAGG-GUCGUGGa---ACgCUCA---UGG- -5'
30804 5' -55.1 NC_006552.1 + 4000 0.68 0.65543
Target:  5'- aCACCUuauggcgcugcggauUCCAGCGCCUUGauuCGGGUGg- -3'
miRNA:   3'- aGUGGA---------------GGGUCGUGGAAC---GCUCAUgg -5'
30804 5' -55.1 NC_006552.1 + 12619 0.68 0.65978
Target:  5'- gUCGCCggccguagucugCCCGGCGCUggcuacGCGGGUcuugGCCu -3'
miRNA:   3'- -AGUGGa-----------GGGUCGUGGaa----CGCUCA----UGG- -5'
30804 5' -55.1 NC_006552.1 + 29816 0.68 0.672806
Target:  5'- cCGCCaCCCAGCgugACgUUGCGAcUGCUg -3'
miRNA:   3'- aGUGGaGGGUCG---UGgAACGCUcAUGG- -5'
30804 5' -55.1 NC_006552.1 + 7560 0.67 0.683619
Target:  5'- uUCAgUucgCCCuGCGCC-UGCGGGaUGCCg -3'
miRNA:   3'- -AGUgGa--GGGuCGUGGaACGCUC-AUGG- -5'
30804 5' -55.1 NC_006552.1 + 18441 0.67 0.694385
Target:  5'- aCAuCCUCuCCAGCAUCagcgaaugcUGCGGGaACCg -3'
miRNA:   3'- aGU-GGAG-GGUCGUGGa--------ACGCUCaUGG- -5'
30804 5' -55.1 NC_006552.1 + 24771 0.67 0.704023
Target:  5'- aCGCCcugCCCaucggucAGCACCUgggcGCGGGUgaugacGCCg -3'
miRNA:   3'- aGUGGa--GGG-------UCGUGGAa---CGCUCA------UGG- -5'
30804 5' -55.1 NC_006552.1 + 33455 0.67 0.714668
Target:  5'- cCGCCUCCgcgacggCAGCGCCUUugaugGUGAuaACCa -3'
miRNA:   3'- aGUGGAGG-------GUCGUGGAA-----CGCUcaUGG- -5'
30804 5' -55.1 NC_006552.1 + 55020 0.67 0.726283
Target:  5'- cUCACCUUCCAGCAauucauccCCgagcUGCuGGUAgCa -3'
miRNA:   3'- -AGUGGAGGGUCGU--------GGa---ACGcUCAUgG- -5'
30804 5' -55.1 NC_006552.1 + 60820 0.66 0.733618
Target:  5'- aUCACCUgccccuacggcgagCCCGGCgAUCgguUGUGGGUGCg -3'
miRNA:   3'- -AGUGGA--------------GGGUCG-UGGa--ACGCUCAUGg -5'
30804 5' -55.1 NC_006552.1 + 58335 0.66 0.787291
Target:  5'- aUCACCUCCUG--GCCUcGCGGGgGCa -3'
miRNA:   3'- -AGUGGAGGGUcgUGGAaCGCUCaUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.