miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30806 5' -62.2 NC_006552.1 + 17756 0.67 0.328339
Target:  5'- aGGCCGugucguuauucGCCCGA-GUGCUCGCcAGGGa -3'
miRNA:   3'- -UCGGU-----------CGGGUUgCGCGGGCGuUCCCg -5'
30806 5' -62.2 NC_006552.1 + 8032 0.67 0.320786
Target:  5'- uGCaUAGCCCu-CGC-CCUGCAAcuGGGCg -3'
miRNA:   3'- uCG-GUCGGGuuGCGcGGGCGUU--CCCG- -5'
30806 5' -62.2 NC_006552.1 + 3577 0.67 0.320786
Target:  5'- uGCUGGCCgAGC-CGCCgGCGccGGCa -3'
miRNA:   3'- uCGGUCGGgUUGcGCGGgCGUucCCG- -5'
30806 5' -62.2 NC_006552.1 + 54243 0.67 0.320786
Target:  5'- uGGCgAGCaaaCCAGCGCGCCCuGCGccucccAGGaGUu -3'
miRNA:   3'- -UCGgUCG---GGUUGCGCGGG-CGU------UCC-CG- -5'
30806 5' -62.2 NC_006552.1 + 44818 0.67 0.320786
Target:  5'- cGCCcuCCCGGCGaacgGCCUGCAAuGcGGCg -3'
miRNA:   3'- uCGGucGGGUUGCg---CGGGCGUU-C-CCG- -5'
30806 5' -62.2 NC_006552.1 + 50269 0.68 0.306071
Target:  5'- gGGCCuccgcaugaAGCCaaaugCGACugGCGCCCGCc-GGGCg -3'
miRNA:   3'- -UCGG---------UCGG-----GUUG--CGCGGGCGuuCCCG- -5'
30806 5' -62.2 NC_006552.1 + 47942 0.68 0.306071
Target:  5'- gAGCUgcaGGCCC---GCGCCUGCAAGGu- -3'
miRNA:   3'- -UCGG---UCGGGuugCGCGGGCGUUCCcg -5'
30806 5' -62.2 NC_006552.1 + 25804 0.68 0.306071
Target:  5'- cGGCCGGUgaugCCGGCGagcaCGCCCGCAugaaccucGGCg -3'
miRNA:   3'- -UCGGUCG----GGUUGC----GCGGGCGUuc------CCG- -5'
30806 5' -62.2 NC_006552.1 + 13021 0.68 0.306071
Target:  5'- cGGcCCAGCgCAaauuccuccaacACGCGaCCgGCcAGGGCa -3'
miRNA:   3'- -UC-GGUCGgGU------------UGCGC-GGgCGuUCCCG- -5'
30806 5' -62.2 NC_006552.1 + 56379 0.68 0.29891
Target:  5'- cGCCA-CCCGccgaGCGCCC-CAcccGGGGCg -3'
miRNA:   3'- uCGGUcGGGUug--CGCGGGcGU---UCCCG- -5'
30806 5' -62.2 NC_006552.1 + 14094 0.68 0.29891
Target:  5'- cGGCCGGCCgGGcCGCGCUucaugucgcgCGCAuccGGCg -3'
miRNA:   3'- -UCGGUCGGgUU-GCGCGG----------GCGUuc-CCG- -5'
30806 5' -62.2 NC_006552.1 + 62725 0.68 0.29891
Target:  5'- gAGCCAaccauGCCCAACuacuaCCC-CAAGGGCg -3'
miRNA:   3'- -UCGGU-----CGGGUUGcgc--GGGcGUUCCCG- -5'
30806 5' -62.2 NC_006552.1 + 44570 0.68 0.29188
Target:  5'- cGCCugcuGCCUGGCacgagugagcagGCGCUCGUAGGcGGCa -3'
miRNA:   3'- uCGGu---CGGGUUG------------CGCGGGCGUUC-CCG- -5'
30806 5' -62.2 NC_006552.1 + 51892 0.68 0.29188
Target:  5'- aAGCCAGCaagCCGaaAUGCGCcgCCGCAuggAGGaGCa -3'
miRNA:   3'- -UCGGUCG---GGU--UGCGCG--GGCGU---UCC-CG- -5'
30806 5' -62.2 NC_006552.1 + 36189 0.68 0.29188
Target:  5'- cGCCGGCaCCcGCGuCGgCUGCGAcguuGGGCu -3'
miRNA:   3'- uCGGUCG-GGuUGC-GCgGGCGUU----CCCG- -5'
30806 5' -62.2 NC_006552.1 + 20664 0.68 0.284979
Target:  5'- gGGCaCGGgCgAACaGCGCCUGCucgauGGGCg -3'
miRNA:   3'- -UCG-GUCgGgUUG-CGCGGGCGuu---CCCG- -5'
30806 5' -62.2 NC_006552.1 + 44065 0.68 0.284296
Target:  5'- cGGCC-GCCCGGCGCGCuuccucuucgccgCCGCGcucuuGGCc -3'
miRNA:   3'- -UCGGuCGGGUUGCGCG-------------GGCGUuc---CCG- -5'
30806 5' -62.2 NC_006552.1 + 23167 0.68 0.278208
Target:  5'- -aCCGGCaCCAGCGcCGCCaCGUccAGGGUa -3'
miRNA:   3'- ucGGUCG-GGUUGC-GCGG-GCGu-UCCCG- -5'
30806 5' -62.2 NC_006552.1 + 53876 0.68 0.278208
Target:  5'- aAGgCAGCCU-ACGCa-CCGCAAGuGGCa -3'
miRNA:   3'- -UCgGUCGGGuUGCGcgGGCGUUC-CCG- -5'
30806 5' -62.2 NC_006552.1 + 9935 0.68 0.270908
Target:  5'- uGCCGGUCUuuugcgaauACGCGUgggcgauCCGCAGGGGg -3'
miRNA:   3'- uCGGUCGGGu--------UGCGCG-------GGCGUUCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.