miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30807 3' -56 NC_006552.1 + 12442 0.66 0.723278
Target:  5'- --cUCGCgggugcggaacuggaAGCCgGGGACGGCGCCa--- -3'
miRNA:   3'- gauAGCG---------------UCGG-UCUUGCCGCGGguug -5'
30807 3' -56 NC_006552.1 + 49592 0.66 0.686905
Target:  5'- ---gCGCAGCguucAACuGCGCCCAGCa -3'
miRNA:   3'- gauaGCGUCGguc-UUGcCGCGGGUUG- -5'
30807 3' -56 NC_006552.1 + 42725 0.66 0.686905
Target:  5'- aCUG-CGguGCCGGuACGaacacuccGCGCUCGACg -3'
miRNA:   3'- -GAUaGCguCGGUCuUGC--------CGCGGGUUG- -5'
30807 3' -56 NC_006552.1 + 47698 0.66 0.676074
Target:  5'- --uUCGCccAGCCGGAgguGGCGCgUAACg -3'
miRNA:   3'- gauAGCG--UCGGUCUug-CCGCGgGUUG- -5'
30807 3' -56 NC_006552.1 + 42867 0.66 0.676074
Target:  5'- gCUGU-GCAGuuCCcGAACGGCGUCgAGCa -3'
miRNA:   3'- -GAUAgCGUC--GGuCUUGCCGCGGgUUG- -5'
30807 3' -56 NC_006552.1 + 39435 0.66 0.674989
Target:  5'- -gAUCuGCGGCCGGAACGcuucggagcaugcGCGgUCGGCa -3'
miRNA:   3'- gaUAG-CGUCGGUCUUGC-------------CGCgGGUUG- -5'
30807 3' -56 NC_006552.1 + 48497 0.66 0.665202
Target:  5'- aCUGcgaGcCGGCCuGAGCccgcGCGCCCAGCa -3'
miRNA:   3'- -GAUag-C-GUCGGuCUUGc---CGCGGGUUG- -5'
30807 3' -56 NC_006552.1 + 20506 0.67 0.654299
Target:  5'- aUGUCGCGGuUCAGAuuCGGcCGCCuuCAGCc -3'
miRNA:   3'- gAUAGCGUC-GGUCUu-GCC-GCGG--GUUG- -5'
30807 3' -56 NC_006552.1 + 24721 0.67 0.654299
Target:  5'- -gGUCGUAGgccaCCAGc-CGGCGCCgGGCc -3'
miRNA:   3'- gaUAGCGUC----GGUCuuGCCGCGGgUUG- -5'
30807 3' -56 NC_006552.1 + 11738 0.67 0.654299
Target:  5'- --cUUGCcggugaGGCCGGAGCGGCgaauggcacGCUCGGCa -3'
miRNA:   3'- gauAGCG------UCGGUCUUGCCG---------CGGGUUG- -5'
30807 3' -56 NC_006552.1 + 30096 0.67 0.654299
Target:  5'- ----gGCuGGCCAGccugguccacGACGGUGCCCGAg -3'
miRNA:   3'- gauagCG-UCGGUC----------UUGCCGCGGGUUg -5'
30807 3' -56 NC_006552.1 + 56262 0.67 0.643376
Target:  5'- --cUgGCAGCCaAGGcCGGCGUCCGc- -3'
miRNA:   3'- gauAgCGUCGG-UCUuGCCGCGGGUug -5'
30807 3' -56 NC_006552.1 + 12322 0.67 0.632443
Target:  5'- ---gCGUAGUCGcucGGCGGCGCCCuGACu -3'
miRNA:   3'- gauaGCGUCGGUc--UUGCCGCGGG-UUG- -5'
30807 3' -56 NC_006552.1 + 53303 0.68 0.59968
Target:  5'- ---gCGCAGCCcgccGcGCGGCGCaCAACa -3'
miRNA:   3'- gauaGCGUCGGu---CuUGCCGCGgGUUG- -5'
30807 3' -56 NC_006552.1 + 32699 0.68 0.588802
Target:  5'- -cGUCGcCGGCCGGcGCGGgGCCgGu- -3'
miRNA:   3'- gaUAGC-GUCGGUCuUGCCgCGGgUug -5'
30807 3' -56 NC_006552.1 + 10833 0.68 0.556415
Target:  5'- -gGUUGUucGCCGGGcuGCGGCGCugCCGACu -3'
miRNA:   3'- gaUAGCGu-CGGUCU--UGCCGCG--GGUUG- -5'
30807 3' -56 NC_006552.1 + 23789 0.68 0.545728
Target:  5'- uCUG-CGCAaCCGGAAC-GCGCCUGACu -3'
miRNA:   3'- -GAUaGCGUcGGUCUUGcCGCGGGUUG- -5'
30807 3' -56 NC_006552.1 + 41377 0.69 0.493428
Target:  5'- ----gGCAGCCGGAAaacaGGCGCCa--- -3'
miRNA:   3'- gauagCGUCGGUCUUg---CCGCGGguug -5'
30807 3' -56 NC_006552.1 + 56473 0.7 0.483237
Target:  5'- cCUGUC--AGgCAGGGCGGCGUCCAGu -3'
miRNA:   3'- -GAUAGcgUCgGUCUUGCCGCGGGUUg -5'
30807 3' -56 NC_006552.1 + 44510 0.7 0.443544
Target:  5'- -gAUCGCAGCagcucGGCGGCccgcaucgcuGCCCAACg -3'
miRNA:   3'- gaUAGCGUCGguc--UUGCCG----------CGGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.