miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30808 3' -61.5 NC_006552.1 + 45424 0.66 0.476562
Target:  5'- cCGGGGCCGGcGCaGCCuCC--CCGGc -3'
miRNA:   3'- uGUCCCGGCCaCGgUGGuGGuaGGCC- -5'
30808 3' -61.5 NC_006552.1 + 44004 0.66 0.476562
Target:  5'- cCAGGGCCaGGcGaaccuCGCCGgUGUCCGGg -3'
miRNA:   3'- uGUCCCGG-CCaCg----GUGGUgGUAGGCC- -5'
30808 3' -61.5 NC_006552.1 + 53899 0.66 0.467025
Target:  5'- gGCAGGGCCaGGacgGCCaggACCACUAcagcaCCGa -3'
miRNA:   3'- -UGUCCCGG-CCa--CGG---UGGUGGUa----GGCc -5'
30808 3' -61.5 NC_006552.1 + 40878 0.66 0.467025
Target:  5'- gGCAGGgauggaGCCGGUaacgacuuCCugCGCCuuGUCCGGu -3'
miRNA:   3'- -UGUCC------CGGCCAc-------GGugGUGG--UAGGCC- -5'
30808 3' -61.5 NC_006552.1 + 20689 0.66 0.457588
Target:  5'- gAUGGGcGCCGGcaguccugUGCCGCCcGCCAUCa-- -3'
miRNA:   3'- -UGUCC-CGGCC--------ACGGUGG-UGGUAGgcc -5'
30808 3' -61.5 NC_006552.1 + 62814 0.66 0.448254
Target:  5'- cACGauGCCGGU-CCACCGCCGUgaCGGu -3'
miRNA:   3'- -UGUccCGGCCAcGGUGGUGGUAg-GCC- -5'
30808 3' -61.5 NC_006552.1 + 13304 0.66 0.448254
Target:  5'- --cGGGCUugGGUGCCuCUGCCgGUUCGGa -3'
miRNA:   3'- uguCCCGG--CCACGGuGGUGG-UAGGCC- -5'
30808 3' -61.5 NC_006552.1 + 52941 0.66 0.429909
Target:  5'- cGCcuGcGCCGGcGcCCGCCGCCGgugcggcaUCCGGg -3'
miRNA:   3'- -UGucC-CGGCCaC-GGUGGUGGU--------AGGCC- -5'
30808 3' -61.5 NC_006552.1 + 12683 0.66 0.420903
Target:  5'- cGCAGGGCCuuGGUGCUcucaGCCuCCAgUUCGu -3'
miRNA:   3'- -UGUCCCGG--CCACGG----UGGuGGU-AGGCc -5'
30808 3' -61.5 NC_006552.1 + 34180 0.66 0.420903
Target:  5'- aGCAGGGCgCGGU-CCACCgcguacugauuGCCGaagcuaUCCGa -3'
miRNA:   3'- -UGUCCCG-GCCAcGGUGG-----------UGGU------AGGCc -5'
30808 3' -61.5 NC_006552.1 + 3599 0.67 0.392868
Target:  5'- gGCAGGacuuGCCGcUGCCugCuaucaguuuuccCCGUCCGGg -3'
miRNA:   3'- -UGUCC----CGGCcACGGugGu-----------GGUAGGCC- -5'
30808 3' -61.5 NC_006552.1 + 56264 0.67 0.386051
Target:  5'- gGCAGccaaGGCCGGcguccGCCAguUCGCCAUCCa- -3'
miRNA:   3'- -UGUC----CCGGCCa----CGGU--GGUGGUAGGcc -5'
30808 3' -61.5 NC_006552.1 + 14092 0.68 0.329819
Target:  5'- uACGGccGGCCGG-GCCGCgcuucaugucgCGCgCAUCCGGc -3'
miRNA:   3'- -UGUC--CCGGCCaCGGUG-----------GUG-GUAGGCC- -5'
30808 3' -61.5 NC_006552.1 + 32135 0.69 0.314903
Target:  5'- aGCGGcuuGCCGGUGCaUGCgCGCCAUuCCGGc -3'
miRNA:   3'- -UGUCc--CGGCCACG-GUG-GUGGUA-GGCC- -5'
30808 3' -61.5 NC_006552.1 + 46415 0.69 0.314903
Target:  5'- -aGGGGCUuGGcGCCACCACCcagaGUgCGGc -3'
miRNA:   3'- ugUCCCGG-CCaCGGUGGUGG----UAgGCC- -5'
30808 3' -61.5 NC_006552.1 + 24719 0.69 0.314903
Target:  5'- --cGGGUCGuagGCCACCAgCCGgcgCCGGg -3'
miRNA:   3'- uguCCCGGCca-CGGUGGU-GGUa--GGCC- -5'
30808 3' -61.5 NC_006552.1 + 17021 0.69 0.300502
Target:  5'- cCGGGGCCGGaaGCCGagcaUGCCGUCCu- -3'
miRNA:   3'- uGUCCCGGCCa-CGGUg---GUGGUAGGcc -5'
30808 3' -61.5 NC_006552.1 + 41508 0.7 0.250431
Target:  5'- uCAGGGUCGGaaacgggcugcauggUGCUGCUACCAcucgCCGGc -3'
miRNA:   3'- uGUCCCGGCC---------------ACGGUGGUGGUa---GGCC- -5'
30808 3' -61.5 NC_006552.1 + 4416 1.08 0.00037
Target:  5'- gACAGGGCCGGUGCCACCACCAUCCGGc -3'
miRNA:   3'- -UGUCCCGGCCACGGUGGUGGUAGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.