Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30808 | 5' | -54.3 | NC_006552.1 | + | 25627 | 0.66 | 0.755006 |
Target: 5'- uACCAGuGGCCaGGUcGGCGGCCa--- -3' miRNA: 3'- cUGGUU-UCGGaCCAuCUGCCGGaaca -5' |
|||||||
30808 | 5' | -54.3 | NC_006552.1 | + | 61756 | 0.66 | 0.753965 |
Target: 5'- cGACCAgcaugccAGGCCUguugcGGUGG-CGGCCUc-- -3' miRNA: 3'- -CUGGU-------UUCGGA-----CCAUCuGCCGGAaca -5' |
|||||||
30808 | 5' | -54.3 | NC_006552.1 | + | 50405 | 0.75 | 0.303531 |
Target: 5'- aACgCAAAGCCaucugGGUGGGCGGCCUg-- -3' miRNA: 3'- cUG-GUUUCGGa----CCAUCUGCCGGAaca -5' |
|||||||
30808 | 5' | -54.3 | NC_006552.1 | + | 4451 | 1.06 | 0.001953 |
Target: 5'- uGACCAAAGCCUGGUAGACGGCCUUGUc -3' miRNA: 3'- -CUGGUUUCGGACCAUCUGCCGGAACA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home