miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30810 3' -55.1 NC_006552.1 + 41394 0.66 0.762119
Target:  5'- cGCCACucagGGUC-AGCCaggCAGCGCg -3'
miRNA:   3'- -UGGUGucaaCUAGcUCGGa--GUCGCGa -5'
30810 3' -55.1 NC_006552.1 + 10699 0.66 0.762119
Target:  5'- uGCCGCGGUgccagccgGuaucUCGAcgaacgGCCUCGGCGUUu -3'
miRNA:   3'- -UGGUGUCAa-------Cu---AGCU------CGGAGUCGCGA- -5'
30810 3' -55.1 NC_006552.1 + 14737 0.66 0.75182
Target:  5'- cGCCGCGGUgcucggccuUGAUCugcGGCaugUCGGCGCg -3'
miRNA:   3'- -UGGUGUCA---------ACUAGc--UCGg--AGUCGCGa -5'
30810 3' -55.1 NC_006552.1 + 41129 0.66 0.75182
Target:  5'- gUCGCGGUccUGcgCGAugauGCCgCAGCGCUg -3'
miRNA:   3'- uGGUGUCA--ACuaGCU----CGGaGUCGCGA- -5'
30810 3' -55.1 NC_006552.1 + 7102 0.66 0.741399
Target:  5'- uGCgGCGGUUGAUCu-GCUcugCGGCGCc -3'
miRNA:   3'- -UGgUGUCAACUAGcuCGGa--GUCGCGa -5'
30810 3' -55.1 NC_006552.1 + 34905 0.66 0.719168
Target:  5'- gACgCGCAGUUGGUCGcugccaaucucaGGCCagugcccuugcccUCGGCGUa -3'
miRNA:   3'- -UG-GUGUCAACUAGC------------UCGG-------------AGUCGCGa -5'
30810 3' -55.1 NC_006552.1 + 44110 0.67 0.687864
Target:  5'- cGCCugGGUUGAUaGuGCUUCAGC-Ca -3'
miRNA:   3'- -UGGugUCAACUAgCuCGGAGUCGcGa -5'
30810 3' -55.1 NC_006552.1 + 15355 0.67 0.687864
Target:  5'- cGCCGCAGgcUGcUCGAGCUUCuguuuggccuGGCGUa -3'
miRNA:   3'- -UGGUGUCa-ACuAGCUCGGAG----------UCGCGa -5'
30810 3' -55.1 NC_006552.1 + 20194 0.67 0.687864
Target:  5'- cGCUGCuGGUUGAUCu-GCCcCAGCGCc -3'
miRNA:   3'- -UGGUG-UCAACUAGcuCGGaGUCGCGa -5'
30810 3' -55.1 NC_006552.1 + 1968 0.67 0.676951
Target:  5'- uACCACGGaccUGcaccCGAGCgaCAGCGCUg -3'
miRNA:   3'- -UGGUGUCa--ACua--GCUCGgaGUCGCGA- -5'
30810 3' -55.1 NC_006552.1 + 12193 0.67 0.655008
Target:  5'- gGCCAguGccUUG-UCGgaccgcgcagaGGCCUCAGCGCg -3'
miRNA:   3'- -UGGUguC--AACuAGC-----------UCGGAGUCGCGa -5'
30810 3' -55.1 NC_006552.1 + 35846 0.68 0.618655
Target:  5'- cGCCGcCAGUUGGUUguccugcgacgucgGGGCCUCgccugccguGGCGCg -3'
miRNA:   3'- -UGGU-GUCAACUAG--------------CUCGGAG---------UCGCGa -5'
30810 3' -55.1 NC_006552.1 + 56601 0.68 0.599956
Target:  5'- cACCACAccuacAUCGAGCCUuucggCGGCGCg -3'
miRNA:   3'- -UGGUGUcaac-UAGCUCGGA-----GUCGCGa -5'
30810 3' -55.1 NC_006552.1 + 30440 0.69 0.534872
Target:  5'- cCCGCAGUUGAUCGAGUaguacCGGCu-- -3'
miRNA:   3'- uGGUGUCAACUAGCUCGga---GUCGcga -5'
30810 3' -55.1 NC_006552.1 + 3109 1.07 0.00155
Target:  5'- gACCACAGUUGAUCGAGCCUCAGCGCUc -3'
miRNA:   3'- -UGGUGUCAACUAGCUCGGAGUCGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.