miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30810 5' -60.1 NC_006552.1 + 2058 0.68 0.388014
Target:  5'- uUGAGCGcGcCGGCGUcgugcgcggccugCUGAucgaacucgacGCCGGCGGCa -3'
miRNA:   3'- -AUUCGC-C-GCUGCG-------------GACU-----------CGGCUGCCG- -5'
30810 5' -60.1 NC_006552.1 + 3143 1.1 0.000351
Target:  5'- gUAAGCGGCGACGCCUGAGCCGACGGCg -3'
miRNA:   3'- -AUUCGCCGCUGCGGACUCGGCUGCCG- -5'
30810 5' -60.1 NC_006552.1 + 4736 0.67 0.443006
Target:  5'- gAGGCGGCGuCuCCUGcaccAGCuuCGGCGGUg -3'
miRNA:   3'- aUUCGCCGCuGcGGAC----UCG--GCUGCCG- -5'
30810 5' -60.1 NC_006552.1 + 5024 0.71 0.260046
Target:  5'- -uGGCGGUGGCGuCCUGGuacagguGCCGAUaGGUa -3'
miRNA:   3'- auUCGCCGCUGC-GGACU-------CGGCUG-CCG- -5'
30810 5' -60.1 NC_006552.1 + 10766 0.66 0.481357
Target:  5'- --cGCGGUGcucagggcAUGCagauUGGcGCCGACGGCa -3'
miRNA:   3'- auuCGCCGC--------UGCGg---ACU-CGGCUGCCG- -5'
30810 5' -60.1 NC_006552.1 + 10828 0.68 0.371824
Target:  5'- cAGGCGGUuguuCGCC-GGGCUG-CGGCg -3'
miRNA:   3'- aUUCGCCGcu--GCGGaCUCGGCuGCCG- -5'
30810 5' -60.1 NC_006552.1 + 12399 0.66 0.471614
Target:  5'- -cGGCGGUGuCGCCUGucaccAGCUuACGGa -3'
miRNA:   3'- auUCGCCGCuGCGGAC-----UCGGcUGCCg -5'
30810 5' -60.1 NC_006552.1 + 12894 0.69 0.331466
Target:  5'- -cGGCGGCGuGCGCCuUGAuGUCGucguCGGUg -3'
miRNA:   3'- auUCGCCGC-UGCGG-ACU-CGGCu---GCCG- -5'
30810 5' -60.1 NC_006552.1 + 14297 0.67 0.433689
Target:  5'- gAAGUauucGGCGcGgGCCUGGGCCu-CGGCc -3'
miRNA:   3'- aUUCG----CCGC-UgCGGACUCGGcuGCCG- -5'
30810 5' -60.1 NC_006552.1 + 21153 0.66 0.520235
Target:  5'- -cGGCGGCGACGCgauagGcgcauccGGCCGcguCGGUg -3'
miRNA:   3'- auUCGCCGCUGCGga---C-------UCGGCu--GCCG- -5'
30810 5' -60.1 NC_006552.1 + 21992 0.67 0.424486
Target:  5'- --uGCaGCGccccaguCGCCUGAucGCUGACGGUg -3'
miRNA:   3'- auuCGcCGCu------GCGGACU--CGGCUGCCG- -5'
30810 5' -60.1 NC_006552.1 + 22516 0.66 0.495158
Target:  5'- gAAGUGGUGGgcCGCCUugugaucggcGAGCgcgguaugcccccagCGGCGGCg -3'
miRNA:   3'- aUUCGCCGCU--GCGGA----------CUCG---------------GCUGCCG- -5'
30810 5' -60.1 NC_006552.1 + 25239 0.67 0.443006
Target:  5'- uUGAGCuGCGACG-CUGuGgCGAUGGUu -3'
miRNA:   3'- -AUUCGcCGCUGCgGACuCgGCUGCCG- -5'
30810 5' -60.1 NC_006552.1 + 26231 0.69 0.355287
Target:  5'- cAGGUGGCGAaa-CUGcGCCGGuCGGCc -3'
miRNA:   3'- aUUCGCCGCUgcgGACuCGGCU-GCCG- -5'
30810 5' -60.1 NC_006552.1 + 26528 0.71 0.260688
Target:  5'- -cAGCGGCGGCGCCgGGGUguccagCGucaGGCg -3'
miRNA:   3'- auUCGCCGCUGCGGaCUCG------GCug-CCG- -5'
30810 5' -60.1 NC_006552.1 + 26892 0.68 0.406438
Target:  5'- ---uCGGCGACGUugUUGAuGCCGgccaGCGGCa -3'
miRNA:   3'- auucGCCGCUGCG--GACU-CGGC----UGCCG- -5'
30810 5' -60.1 NC_006552.1 + 28683 0.71 0.236022
Target:  5'- --uGCGGCGGCGCCac-GCCGcCuGGCa -3'
miRNA:   3'- auuCGCCGCUGCGGacuCGGCuG-CCG- -5'
30810 5' -60.1 NC_006552.1 + 28748 0.69 0.347214
Target:  5'- -cGGCGGCGAagGCau--GCCGAUGGUg -3'
miRNA:   3'- auUCGCCGCUg-CGgacuCGGCUGCCG- -5'
30810 5' -60.1 NC_006552.1 + 29308 0.71 0.267174
Target:  5'- -cGGCGGCGGCGCaauguuGCCGGCcGCc -3'
miRNA:   3'- auUCGCCGCUGCGgacu--CGGCUGcCG- -5'
30810 5' -60.1 NC_006552.1 + 33256 0.72 0.202722
Target:  5'- cGAaCGGUGGCGCCaccuUGucGCCGAUGGCg -3'
miRNA:   3'- aUUcGCCGCUGCGG----ACu-CGGCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.