miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30812 5' -56.1 NC_006552.1 + 26403 0.66 0.756849
Target:  5'- -aGCGCgcCGGCaucggucacuuccgCGAAGGCGAUcaGCGa -3'
miRNA:   3'- gcUGCGauGCCGa-------------GCUUCCGCUA--CGC- -5'
30812 5' -56.1 NC_006552.1 + 8265 0.66 0.752823
Target:  5'- ---gGCUACGG-UCGguGGCGgcGCGg -3'
miRNA:   3'- gcugCGAUGCCgAGCuuCCGCuaCGC- -5'
30812 5' -56.1 NC_006552.1 + 39712 0.66 0.742678
Target:  5'- uCGGCG--ACGGCUCGccAGGCGG-GCu -3'
miRNA:   3'- -GCUGCgaUGCCGAGCu-UCCGCUaCGc -5'
30812 5' -56.1 NC_006552.1 + 14849 0.66 0.742678
Target:  5'- gGGCGcCUugGGCUUGuucAGGCucgccaGGUGCu -3'
miRNA:   3'- gCUGC-GAugCCGAGCu--UCCG------CUACGc -5'
30812 5' -56.1 NC_006552.1 + 40136 0.67 0.669277
Target:  5'- uGAUGC-GCGGCaCGAuGGCGAacUGCu -3'
miRNA:   3'- gCUGCGaUGCCGaGCUuCCGCU--ACGc -5'
30812 5' -56.1 NC_006552.1 + 38508 0.67 0.658577
Target:  5'- uGAUGUugcuUACGcGCUCGAuGGUGgcGCGg -3'
miRNA:   3'- gCUGCG----AUGC-CGAGCUuCCGCuaCGC- -5'
30812 5' -56.1 NC_006552.1 + 3716 0.67 0.647852
Target:  5'- --uCGCUGCGGUacugggugcugUCGAGGGUGuucGCGg -3'
miRNA:   3'- gcuGCGAUGCCG-----------AGCUUCCGCua-CGC- -5'
30812 5' -56.1 NC_006552.1 + 28410 0.68 0.637114
Target:  5'- uCGAUGCUguagcGCGGCUCGAugcugauaccGCGAaugGCGa -3'
miRNA:   3'- -GCUGCGA-----UGCCGAGCUuc--------CGCUa--CGC- -5'
30812 5' -56.1 NC_006552.1 + 32127 0.68 0.604911
Target:  5'- uGGCGUacaGCGGCUUGccGGUGcAUGCGc -3'
miRNA:   3'- gCUGCGa--UGCCGAGCuuCCGC-UACGC- -5'
30812 5' -56.1 NC_006552.1 + 10721 0.68 0.589937
Target:  5'- uCGACGa-ACGGcCUCGGcguuuucgcccauGGCGAUGCGc -3'
miRNA:   3'- -GCUGCgaUGCC-GAGCUu------------CCGCUACGC- -5'
30812 5' -56.1 NC_006552.1 + 27083 0.69 0.541316
Target:  5'- aGACGUUGCGGaCUCGcauGCGAUccGCGa -3'
miRNA:   3'- gCUGCGAUGCC-GAGCuucCGCUA--CGC- -5'
30812 5' -56.1 NC_006552.1 + 4806 0.7 0.510328
Target:  5'- -cAC-CUGCGGC--GggGGCGAUGCGc -3'
miRNA:   3'- gcUGcGAUGCCGagCuuCCGCUACGC- -5'
30812 5' -56.1 NC_006552.1 + 12335 0.71 0.44123
Target:  5'- gCGGCGCccugacUGCGGUcauccUCGAAGGCGucGCGg -3'
miRNA:   3'- -GCUGCG------AUGCCG-----AGCUUCCGCuaCGC- -5'
30812 5' -56.1 NC_006552.1 + 40592 0.73 0.336329
Target:  5'- aCGcACGCUGgucCGGgUCGAuGGUGAUGCGc -3'
miRNA:   3'- -GC-UGCGAU---GCCgAGCUuCCGCUACGC- -5'
30812 5' -56.1 NC_006552.1 + 2590 1.09 0.001227
Target:  5'- aCGACGCUACGGCUCGAAGGCGAUGCGc -3'
miRNA:   3'- -GCUGCGAUGCCGAGCUUCCGCUACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.