miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30813 3' -65.7 NC_006552.1 + 53124 0.66 0.291321
Target:  5'- cGCUCUGcUCUgCGauGCCGCCGGCAa -3'
miRNA:   3'- -UGAGGCuGGGgGCggCGGCGGUCGUg -5'
30813 3' -65.7 NC_006552.1 + 54006 0.68 0.188551
Target:  5'- gGCcCUGGCCCUgGCCgcgaGCCGCCAcCGCg -3'
miRNA:   3'- -UGaGGCUGGGGgCGG----CGGCGGUcGUG- -5'
30813 3' -65.7 NC_006552.1 + 21171 0.68 0.19331
Target:  5'- cGCaUCCGGCCg-CGUCGgUGCCGGCACa -3'
miRNA:   3'- -UG-AGGCUGGggGCGGCgGCGGUCGUG- -5'
30813 3' -65.7 NC_006552.1 + 45404 0.68 0.208218
Target:  5'- gGCgCCGACgaauuCCCCGcCCGggGCCGGCGCa -3'
miRNA:   3'- -UGaGGCUG-----GGGGC-GGCggCGGUCGUG- -5'
30813 3' -65.7 NC_006552.1 + 62291 0.68 0.208218
Target:  5'- cGCUCCG--UCCCGCgGacaCCGUCGGCGCg -3'
miRNA:   3'- -UGAGGCugGGGGCGgC---GGCGGUCGUG- -5'
30813 3' -65.7 NC_006552.1 + 37648 0.68 0.213404
Target:  5'- cGCUCUcuGCCUCCGCUucuGCUGCCGGCc- -3'
miRNA:   3'- -UGAGGc-UGGGGGCGG---CGGCGGUCGug -5'
30813 3' -65.7 NC_006552.1 + 52769 0.67 0.235268
Target:  5'- cGCUCCccACCCCCGagcagaUCGCCGCCcaGGCu- -3'
miRNA:   3'- -UGAGGc-UGGGGGC------GGCGGCGG--UCGug -5'
30813 3' -65.7 NC_006552.1 + 13004 0.67 0.24102
Target:  5'- uGCUCgGGCCgUaGCUGCgGcCCAGCGCa -3'
miRNA:   3'- -UGAGgCUGGgGgCGGCGgC-GGUCGUG- -5'
30813 3' -65.7 NC_006552.1 + 24526 0.67 0.24102
Target:  5'- gGCgCUGACgCCCauaGCCGCCGaCCAccuGCAUg -3'
miRNA:   3'- -UGaGGCUG-GGGg--CGGCGGC-GGU---CGUG- -5'
30813 3' -65.7 NC_006552.1 + 3578 0.69 0.179344
Target:  5'- --gCUGGCCgagCCGCCGgCGCCGGCAg -3'
miRNA:   3'- ugaGGCUGGg--GGCGGCgGCGGUCGUg -5'
30813 3' -65.7 NC_006552.1 + 54924 0.69 0.158053
Target:  5'- cGCUUCGACgaCCUGCUGCaggaGCgGGCACu -3'
miRNA:   3'- -UGAGGCUGg-GGGCGGCGg---CGgUCGUG- -5'
30813 3' -65.7 NC_006552.1 + 63736 0.71 0.117217
Target:  5'- uAC-CCGugCCCCGagcaggacaacaugaCCGCCGCCAauauGCGCc -3'
miRNA:   3'- -UGaGGCugGGGGC---------------GGCGGCGGU----CGUG- -5'
30813 3' -65.7 NC_006552.1 + 56050 0.79 0.027165
Target:  5'- gGCUCCGACaCCCUGCUGauccacgguCUGCCGGCACa -3'
miRNA:   3'- -UGAGGCUG-GGGGCGGC---------GGCGGUCGUG- -5'
30813 3' -65.7 NC_006552.1 + 26855 0.78 0.032009
Target:  5'- cCUCgGGCUCUCGCCGCCGCguugCAGCGCg -3'
miRNA:   3'- uGAGgCUGGGGGCGGCGGCG----GUCGUG- -5'
30813 3' -65.7 NC_006552.1 + 60525 0.75 0.06137
Target:  5'- uGCUgCCGAgCCCCGUCuCgGCCAGCACc -3'
miRNA:   3'- -UGA-GGCUgGGGGCGGcGgCGGUCGUG- -5'
30813 3' -65.7 NC_006552.1 + 63813 0.74 0.068325
Target:  5'- aGCUUCGGCgCCCaggccaGCCaGCCGCCGGCGg -3'
miRNA:   3'- -UGAGGCUG-GGGg-----CGG-CGGCGGUCGUg -5'
30813 3' -65.7 NC_006552.1 + 52945 0.74 0.074034
Target:  5'- uGCgCCGGCgCCCGCCGCCGgugCGGCAUc -3'
miRNA:   3'- -UGaGGCUGgGGGCGGCGGCg--GUCGUG- -5'
30813 3' -65.7 NC_006552.1 + 58993 0.73 0.080198
Target:  5'- gAUUCCGACUCuuaCCGCCGgCGCCgAGCAUc -3'
miRNA:   3'- -UGAGGCUGGG---GGCGGCgGCGG-UCGUG- -5'
30813 3' -65.7 NC_006552.1 + 22348 0.72 0.09912
Target:  5'- -aUCCGACa-CCGCCGCCGUaucggugugCAGCACc -3'
miRNA:   3'- ugAGGCUGggGGCGGCGGCG---------GUCGUG- -5'
30813 3' -65.7 NC_006552.1 + 57918 0.72 0.104472
Target:  5'- --cCCGACCCCaaaCGCCGCgGCCaaaccuGGCGCc -3'
miRNA:   3'- ugaGGCUGGGG---GCGGCGgCGG------UCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.