miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30814 3' -49.3 NC_006552.1 + 303 1.12 0.002919
Target:  5'- gGUAUUUGCCCGUCUUCUGCAGCAACCc -3'
miRNA:   3'- -CAUAAACGGGCAGAAGACGUCGUUGG- -5'
30814 3' -49.3 NC_006552.1 + 49174 0.73 0.685498
Target:  5'- ----cUGCCCGca--CUGCGGCGGCCu -3'
miRNA:   3'- cauaaACGGGCagaaGACGUCGUUGG- -5'
30814 3' -49.3 NC_006552.1 + 45791 0.71 0.793928
Target:  5'- cGUGUccggcUUGUCCGUCagCaGCGGCAACUc -3'
miRNA:   3'- -CAUA-----AACGGGCAGaaGaCGUCGUUGG- -5'
30814 3' -49.3 NC_006552.1 + 9933 0.69 0.884305
Target:  5'- ---cUUGCCgGUCUUUUGCgaauacgcgugGGCGAUCc -3'
miRNA:   3'- cauaAACGGgCAGAAGACG-----------UCGUUGG- -5'
30814 3' -49.3 NC_006552.1 + 24295 0.68 0.925729
Target:  5'- cGUAgacGCCCcggccaUCgaUCUGUAGCAGCCa -3'
miRNA:   3'- -CAUaaaCGGGc-----AGa-AGACGUCGUUGG- -5'
30814 3' -49.3 NC_006552.1 + 2368 0.67 0.931022
Target:  5'- aGUAUUcUGgCCGUCggUCUGCcucuaacAGCAGCg -3'
miRNA:   3'- -CAUAA-ACgGGCAGa-AGACG-------UCGUUGg -5'
30814 3' -49.3 NC_006552.1 + 62976 0.66 0.964415
Target:  5'- -----gGCgCCGuUCUUCUGcCGGCgGACCu -3'
miRNA:   3'- cauaaaCG-GGC-AGAAGAC-GUCG-UUGG- -5'
30814 3' -49.3 NC_006552.1 + 9783 0.66 0.96798
Target:  5'- ----cUGUCCGUggaucaUUUCgUGCAGCAACa -3'
miRNA:   3'- cauaaACGGGCA------GAAG-ACGUCGUUGg -5'
30814 3' -49.3 NC_006552.1 + 17547 0.66 0.971283
Target:  5'- -----gGCgCgGUCUUCgGgAGCAGCCu -3'
miRNA:   3'- cauaaaCG-GgCAGAAGaCgUCGUUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.