Results 1 - 11 of 11 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30815 | 3' | -58.8 | NC_006552.1 | + | 19724 | 0.71 | 0.331439 |
Target: 5'- uCGGCGUCGGCCa---CGuUGGcGCUGGc -3' miRNA: 3'- -GUCGCAGCCGGcaugGC-ACCaCGACC- -5' |
|||||||
30815 | 3' | -58.8 | NC_006552.1 | + | 41508 | 0.66 | 0.592712 |
Target: 5'- uCAGgGUCGGaaaCGgGCUGcaUGGUGCUGc -3' miRNA: 3'- -GUCgCAGCCg--GCaUGGC--ACCACGACc -5' |
|||||||
30815 | 3' | -58.8 | NC_006552.1 | + | 41414 | 0.66 | 0.5812 |
Target: 5'- gCAGCGcgccaguUCGGCCGcguCCGUGGggaGC-GGc -3' miRNA: 3'- -GUCGC-------AGCCGGCau-GGCACCa--CGaCC- -5' |
|||||||
30815 | 3' | -58.8 | NC_006552.1 | + | 26725 | 0.67 | 0.551098 |
Target: 5'- aGGCGUC-GCCGUGCaGUGG-GCUu- -3' miRNA: 3'- gUCGCAGcCGGCAUGgCACCaCGAcc -5' |
|||||||
30815 | 3' | -58.8 | NC_006552.1 | + | 25305 | 0.67 | 0.551098 |
Target: 5'- gCGGUGUCGGUCGgcguccaaGCUGggcgGGUagcGCUGGu -3' miRNA: 3'- -GUCGCAGCCGGCa-------UGGCa---CCA---CGACC- -5' |
|||||||
30815 | 3' | -58.8 | NC_006552.1 | + | 59609 | 0.67 | 0.52149 |
Target: 5'- aAGCG-CaGGCCGccuggcagaacucggGCCGggaGGUGCUGGc -3' miRNA: 3'- gUCGCaG-CCGGCa--------------UGGCa--CCACGACC- -5' |
|||||||
30815 | 3' | -58.8 | NC_006552.1 | + | 15508 | 0.67 | 0.510419 |
Target: 5'- -cGCGUCaGCCuUGCCuUGGgccUGCUGGa -3' miRNA: 3'- guCGCAGcCGGcAUGGcACC---ACGACC- -5' |
|||||||
30815 | 3' | -58.8 | NC_006552.1 | + | 26266 | 0.68 | 0.471045 |
Target: 5'- gUAGCGUCGGCaGgaugACCGUGGccGCg-- -3' miRNA: 3'- -GUCGCAGCCGgCa---UGGCACCa-CGacc -5' |
|||||||
30815 | 3' | -58.8 | NC_006552.1 | + | 64440 | 0.69 | 0.433273 |
Target: 5'- -cGCccUCGGCCugGCCGUGGUgggGCUGGu -3' miRNA: 3'- guCGc-AGCCGGcaUGGCACCA---CGACC- -5' |
|||||||
30815 | 3' | -58.8 | NC_006552.1 | + | 38152 | 0.71 | 0.331439 |
Target: 5'- -cGCGUUGaGCUGcugGCCGcgguagcuguUGGUGCUGGg -3' miRNA: 3'- guCGCAGC-CGGCa--UGGC----------ACCACGACC- -5' |
|||||||
30815 | 3' | -58.8 | NC_006552.1 | + | 15256 | 0.66 | 0.613731 |
Target: 5'- aGGCGUCGucuGCCGU-CCGc--UGCUGGu -3' miRNA: 3'- gUCGCAGC---CGGCAuGGCaccACGACC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home