Results 21 - 40 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30815 | 5' | -54 | NC_006552.1 | + | 49500 | 0.67 | 0.782444 |
Target: 5'- gGGCCAaacgcaucugcGACCAGUACCugGaagCGAUc- -3' miRNA: 3'- -CCGGUa----------CUGGUCAUGGugCa--GCUGcg -5' |
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30815 | 5' | -54 | NC_006552.1 | + | 4412 | 0.67 | 0.79214 |
Target: 5'- uGGUgAcagGGCCGGUGCCACcaccaucCGGCGUg -3' miRNA: 3'- -CCGgUa--CUGGUCAUGGUGca-----GCUGCG- -5' |
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30815 | 5' | -54 | NC_006552.1 | + | 43319 | 0.67 | 0.810107 |
Target: 5'- aGGUCcgGACCAaagcccuacgcauGUACCAC-UCGACc- -3' miRNA: 3'- -CCGGuaCUGGU-------------CAUGGUGcAGCUGcg -5' |
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30815 | 5' | -54 | NC_006552.1 | + | 7144 | 0.67 | 0.801673 |
Target: 5'- aGGCCAUcGA-CAGgcgcGCCACGcuguUgGACGCa -3' miRNA: 3'- -CCGGUA-CUgGUCa---UGGUGC----AgCUGCG- -5' |
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30815 | 5' | -54 | NC_006552.1 | + | 34879 | 0.67 | 0.801673 |
Target: 5'- aGGUCc--ACCGGgaagcggGCUugGUUGACGCg -3' miRNA: 3'- -CCGGuacUGGUCa------UGGugCAGCUGCG- -5' |
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30815 | 5' | -54 | NC_006552.1 | + | 27847 | 0.67 | 0.811035 |
Target: 5'- aGGCCGUaGCCGuccaccuuGaUGCCgGCGUCGAUGUu -3' miRNA: 3'- -CCGGUAcUGGU--------C-AUGG-UGCAGCUGCG- -5' |
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30815 | 5' | -54 | NC_006552.1 | + | 34322 | 0.67 | 0.811035 |
Target: 5'- gGGUguUGGaccaCAGgcCCGCaUCGACGCg -3' miRNA: 3'- -CCGguACUg---GUCauGGUGcAGCUGCG- -5' |
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30815 | 5' | -54 | NC_006552.1 | + | 38953 | 0.67 | 0.820215 |
Target: 5'- cGGCCGgacGCCAGcGCgAUGUUGuGCGCc -3' miRNA: 3'- -CCGGUac-UGGUCaUGgUGCAGC-UGCG- -5' |
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30815 | 5' | -54 | NC_006552.1 | + | 34643 | 0.68 | 0.742259 |
Target: 5'- uGGCaacgaaGUGA-CGGUuCUugGUCGGCGCc -3' miRNA: 3'- -CCGg-----UACUgGUCAuGGugCAGCUGCG- -5' |
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30815 | 5' | -54 | NC_006552.1 | + | 18766 | 0.68 | 0.742259 |
Target: 5'- uGGCCuguUGcuGCC-GUGCCGCGUcCGAaCGUg -3' miRNA: 3'- -CCGGu--AC--UGGuCAUGGUGCA-GCU-GCG- -5' |
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30815 | 5' | -54 | NC_006552.1 | + | 13932 | 0.68 | 0.741229 |
Target: 5'- uGCCAcGACagcgcccgcgucgCGG-GCCACGUCGAUGUa -3' miRNA: 3'- cCGGUaCUG-------------GUCaUGGUGCAGCUGCG- -5' |
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30815 | 5' | -54 | NC_006552.1 | + | 14094 | 0.68 | 0.731916 |
Target: 5'- cGGCCGgccgGGCCGcgcuUCAUGUCGcGCGCa -3' miRNA: 3'- -CCGGUa---CUGGUcau-GGUGCAGC-UGCG- -5' |
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30815 | 5' | -54 | NC_006552.1 | + | 44007 | 0.68 | 0.731916 |
Target: 5'- gGGCCAggcgaaccucGCCGGUGuCCGgGUCGACcauGCg -3' miRNA: 3'- -CCGGUac--------UGGUCAU-GGUgCAGCUG---CG- -5' |
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30815 | 5' | -54 | NC_006552.1 | + | 39633 | 0.68 | 0.731916 |
Target: 5'- gGGCgGgaUGcCCAGUGCCuGCuggCGACGCa -3' miRNA: 3'- -CCGgU--ACuGGUCAUGG-UGca-GCUGCG- -5' |
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30815 | 5' | -54 | NC_006552.1 | + | 36012 | 0.68 | 0.762611 |
Target: 5'- uGCCGuccuUGGCCAGgAUCACGgcguucUCGGCGUu -3' miRNA: 3'- cCGGU----ACUGGUCaUGGUGC------AGCUGCG- -5' |
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30815 | 5' | -54 | NC_006552.1 | + | 38683 | 0.68 | 0.762611 |
Target: 5'- aGUCAUGGCU---ACCGCGcccuugguacgcUCGACGCg -3' miRNA: 3'- cCGGUACUGGucaUGGUGC------------AGCUGCG- -5' |
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30815 | 5' | -54 | NC_006552.1 | + | 31277 | 0.68 | 0.762611 |
Target: 5'- cGGCa--GGCCGGUaGCCGUGUCGAUGa -3' miRNA: 3'- -CCGguaCUGGUCA-UGGUGCAGCUGCg -5' |
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30815 | 5' | -54 | NC_006552.1 | + | 37618 | 0.68 | 0.762611 |
Target: 5'- aGGUCG-GACUAGUGuucCUACGUaccgaGACGCu -3' miRNA: 3'- -CCGGUaCUGGUCAU---GGUGCAg----CUGCG- -5' |
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30815 | 5' | -54 | NC_006552.1 | + | 2582 | 0.69 | 0.71095 |
Target: 5'- cGGCCGUGACgAc-GCUACGgcucgaaggCGAUGCg -3' miRNA: 3'- -CCGGUACUGgUcaUGGUGCa--------GCUGCG- -5' |
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30815 | 5' | -54 | NC_006552.1 | + | 58195 | 0.69 | 0.689684 |
Target: 5'- aGGCCcUGGCCGaaGCCACG-CuGCGCc -3' miRNA: 3'- -CCGGuACUGGUcaUGGUGCaGcUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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