miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30815 5' -54 NC_006552.1 + 52311 0.67 0.807312
Target:  5'- cGGCC-UGACUAGccaccucgcgccgGCCACGcCGGCa- -3'
miRNA:   3'- -CCGGuACUGGUCa------------UGGUGCaGCUGcg -5'
30815 5' -54 NC_006552.1 + 7144 0.67 0.801673
Target:  5'- aGGCCAUcGA-CAGgcgcGCCACGcuguUgGACGCa -3'
miRNA:   3'- -CCGGUA-CUgGUCa---UGGUGC----AgCUGCG- -5'
30815 5' -54 NC_006552.1 + 34879 0.67 0.801673
Target:  5'- aGGUCc--ACCGGgaagcggGCUugGUUGACGCg -3'
miRNA:   3'- -CCGGuacUGGUCa------UGGugCAGCUGCG- -5'
30815 5' -54 NC_006552.1 + 4412 0.67 0.79214
Target:  5'- uGGUgAcagGGCCGGUGCCACcaccaucCGGCGUg -3'
miRNA:   3'- -CCGgUa--CUGGUCAUGGUGca-----GCUGCG- -5'
30815 5' -54 NC_006552.1 + 10683 0.67 0.786341
Target:  5'- cGCCAcuUGccAUCAGUGCCGCGgugccagccgguaucUCGACGa -3'
miRNA:   3'- cCGGU--AC--UGGUCAUGGUGC---------------AGCUGCg -5'
30815 5' -54 NC_006552.1 + 49500 0.67 0.782444
Target:  5'- gGGCCAaacgcaucugcGACCAGUACCugGaagCGAUc- -3'
miRNA:   3'- -CCGGUa----------CUGGUCAUGGugCa--GCUGcg -5'
30815 5' -54 NC_006552.1 + 55452 0.67 0.772598
Target:  5'- aGGgCAUGACCGacUACCugG-CGAuCGCc -3'
miRNA:   3'- -CCgGUACUGGUc-AUGGugCaGCU-GCG- -5'
30815 5' -54 NC_006552.1 + 56696 0.67 0.772598
Target:  5'- cGUgGUGaACCuGUuCCGCGUCG-CGCg -3'
miRNA:   3'- cCGgUAC-UGGuCAuGGUGCAGCuGCG- -5'
30815 5' -54 NC_006552.1 + 37618 0.68 0.762611
Target:  5'- aGGUCG-GACUAGUGuucCUACGUaccgaGACGCu -3'
miRNA:   3'- -CCGGUaCUGGUCAU---GGUGCAg----CUGCG- -5'
30815 5' -54 NC_006552.1 + 36012 0.68 0.762611
Target:  5'- uGCCGuccuUGGCCAGgAUCACGgcguucUCGGCGUu -3'
miRNA:   3'- cCGGU----ACUGGUCaUGGUGC------AGCUGCG- -5'
30815 5' -54 NC_006552.1 + 38683 0.68 0.762611
Target:  5'- aGUCAUGGCU---ACCGCGcccuugguacgcUCGACGCg -3'
miRNA:   3'- cCGGUACUGGucaUGGUGC------------AGCUGCG- -5'
30815 5' -54 NC_006552.1 + 31277 0.68 0.762611
Target:  5'- cGGCa--GGCCGGUaGCCGUGUCGAUGa -3'
miRNA:   3'- -CCGguaCUGGUCA-UGGUGCAGCUGCg -5'
30815 5' -54 NC_006552.1 + 34643 0.68 0.742259
Target:  5'- uGGCaacgaaGUGA-CGGUuCUugGUCGGCGCc -3'
miRNA:   3'- -CCGg-----UACUgGUCAuGGugCAGCUGCG- -5'
30815 5' -54 NC_006552.1 + 18766 0.68 0.742259
Target:  5'- uGGCCuguUGcuGCC-GUGCCGCGUcCGAaCGUg -3'
miRNA:   3'- -CCGGu--AC--UGGuCAUGGUGCA-GCU-GCG- -5'
30815 5' -54 NC_006552.1 + 13932 0.68 0.741229
Target:  5'- uGCCAcGACagcgcccgcgucgCGG-GCCACGUCGAUGUa -3'
miRNA:   3'- cCGGUaCUG-------------GUCaUGGUGCAGCUGCG- -5'
30815 5' -54 NC_006552.1 + 14094 0.68 0.731916
Target:  5'- cGGCCGgccgGGCCGcgcuUCAUGUCGcGCGCa -3'
miRNA:   3'- -CCGGUa---CUGGUcau-GGUGCAGC-UGCG- -5'
30815 5' -54 NC_006552.1 + 44007 0.68 0.731916
Target:  5'- gGGCCAggcgaaccucGCCGGUGuCCGgGUCGACcauGCg -3'
miRNA:   3'- -CCGGUac--------UGGUCAU-GGUgCAGCUG---CG- -5'
30815 5' -54 NC_006552.1 + 39633 0.68 0.731916
Target:  5'- gGGCgGgaUGcCCAGUGCCuGCuggCGACGCa -3'
miRNA:   3'- -CCGgU--ACuGGUCAUGG-UGca-GCUGCG- -5'
30815 5' -54 NC_006552.1 + 2582 0.69 0.71095
Target:  5'- cGGCCGUGACgAc-GCUACGgcucgaaggCGAUGCg -3'
miRNA:   3'- -CCGGUACUGgUcaUGGUGCa--------GCUGCG- -5'
30815 5' -54 NC_006552.1 + 42531 0.69 0.71095
Target:  5'- cGCCAguuccgcGGCCAGUAUCugGuUCGaAUGCc -3'
miRNA:   3'- cCGGUa------CUGGUCAUGGugC-AGC-UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.