Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 30816 | 3' | -55.6 | NC_006552.1 | + | 58361 | 0.66 | 0.715728 |
|
Target: 5'- uUUCGCCGUGGccagcccaacacUGGUG-CAGAcCGGCu -3' miRNA: 3'- cAGGCGGCGUC------------ACCACuGUCUuGUCG- -5' |
|||||||
| 30816 | 3' | -55.6 | NC_006552.1 | + | 41134 | 0.67 | 0.661954 |
|
Target: 5'- gGUCCugcgcgaugauGCCGCAGcgcUGGUcGCcguuGAACAGCg -3' miRNA: 3'- -CAGG-----------CGGCGUC---ACCAcUGu---CUUGUCG- -5' |
|||||||
| 30816 | 3' | -55.6 | NC_006552.1 | + | 51564 | 0.67 | 0.64018 |
|
Target: 5'- -aCCGCCGCAcUGGUGACguuGGAAgAu- -3' miRNA: 3'- caGGCGGCGUcACCACUG---UCUUgUcg -5' |
|||||||
| 30816 | 3' | -55.6 | NC_006552.1 | + | 5445 | 0.68 | 0.607488 |
|
Target: 5'- uGUUCGCCGCGcUGGcGGguGAuCGGCg -3' miRNA: 3'- -CAGGCGGCGUcACCaCUguCUuGUCG- -5' |
|||||||
| 30816 | 3' | -55.6 | NC_006552.1 | + | 22355 | 0.68 | 0.59662 |
|
Target: 5'- -aCCGCCGCcGUaucGGUGuGCAGcaccAGCAGCc -3' miRNA: 3'- caGGCGGCGuCA---CCAC-UGUC----UUGUCG- -5' |
|||||||
| 30816 | 3' | -55.6 | NC_006552.1 | + | 9266 | 0.68 | 0.59662 |
|
Target: 5'- aGUCUGCUGUAGUGccGUGGUAGAccaccaACGGCu -3' miRNA: 3'- -CAGGCGGCGUCAC--CACUGUCU------UGUCG- -5' |
|||||||
| 30816 | 3' | -55.6 | NC_006552.1 | + | 57314 | 0.69 | 0.521822 |
|
Target: 5'- -gCCGCgCGCAGUGGccUGGC---GCAGCu -3' miRNA: 3'- caGGCG-GCGUCACC--ACUGucuUGUCG- -5' |
|||||||
| 30816 | 3' | -55.6 | NC_006552.1 | + | 60725 | 0.71 | 0.46075 |
|
Target: 5'- -cCCGCCG-AGUGGUGAagccGCAGCc -3' miRNA: 3'- caGGCGGCgUCACCACUgucuUGUCG- -5' |
|||||||
| 30816 | 3' | -55.6 | NC_006552.1 | + | 28665 | 0.73 | 0.35966 |
|
Target: 5'- -aUgGCUGCAGUGGUGAUcu-GCGGCg -3' miRNA: 3'- caGgCGGCGUCACCACUGucuUGUCG- -5' |
|||||||
| 30816 | 3' | -55.6 | NC_006552.1 | + | 26729 | 0.75 | 0.254347 |
|
Target: 5'- -gUCGCCguGCAGUGGgcuuugccagaguUGGCGGAACGGCu -3' miRNA: 3'- caGGCGG--CGUCACC-------------ACUGUCUUGUCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home