Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30819 | 3' | -61.9 | NC_006552.1 | + | 48877 | 0.76 | 0.074795 |
Target: 5'- -gGCCA-CGCCGGUGCuGCUGCGCAa- -3' miRNA: 3'- uaCGGUcGCGGCCACG-CGGCGUGUac -5' |
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30819 | 3' | -61.9 | NC_006552.1 | + | 51893 | 0.75 | 0.093285 |
Target: 5'- -aGCCAGCaaGCCGaaaUGCGCCGcCGCAUGg -3' miRNA: 3'- uaCGGUCG--CGGCc--ACGCGGC-GUGUAC- -5' |
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30819 | 3' | -61.9 | NC_006552.1 | + | 58610 | 0.73 | 0.122507 |
Target: 5'- -gGUgGGCGUCGGUG-GCCGCGCcgGg -3' miRNA: 3'- uaCGgUCGCGGCCACgCGGCGUGuaC- -5' |
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30819 | 3' | -61.9 | NC_006552.1 | + | 41147 | 0.72 | 0.151786 |
Target: 5'- gAUGCCgcAGCGCUGGU-CGCCGUugaacagcGCAUGg -3' miRNA: 3'- -UACGG--UCGCGGCCAcGCGGCG--------UGUAC- -5' |
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30819 | 3' | -61.9 | NC_006552.1 | + | 7620 | 0.7 | 0.207643 |
Target: 5'- -aGaCCGGCGgCGGUuuGCCGCGCAUu -3' miRNA: 3'- uaC-GGUCGCgGCCAcgCGGCGUGUAc -5' |
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30819 | 3' | -61.9 | NC_006552.1 | + | 7716 | 0.69 | 0.254113 |
Target: 5'- -aGCCGGCGCau-UGCGCUGCGguUGg -3' miRNA: 3'- uaCGGUCGCGgccACGCGGCGUguAC- -5' |
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30819 | 3' | -61.9 | NC_006552.1 | + | 21178 | 0.68 | 0.260488 |
Target: 5'- -gGCC-GCGUCGGUGC-CgGCACAUc -3' miRNA: 3'- uaCGGuCGCGGCCACGcGgCGUGUAc -5' |
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30819 | 3' | -61.9 | NC_006552.1 | + | 8131 | 0.68 | 0.266992 |
Target: 5'- -aGCCAucuGCGCCaGGUG-GUCGCGCAg- -3' miRNA: 3'- uaCGGU---CGCGG-CCACgCGGCGUGUac -5' |
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30819 | 3' | -61.9 | NC_006552.1 | + | 62972 | 0.68 | 0.278351 |
Target: 5'- -gGCCGGCGCCguucuucugccggcGGaccUGCGCCGcCAgGUGu -3' miRNA: 3'- uaCGGUCGCGG--------------CC---ACGCGGC-GUgUAC- -5' |
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30819 | 3' | -61.9 | NC_006552.1 | + | 62590 | 0.68 | 0.286598 |
Target: 5'- -gGCUcgacaagGGCGCCGa-GCGCgGCACGUGg -3' miRNA: 3'- uaCGG-------UCGCGGCcaCGCGgCGUGUAC- -5' |
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30819 | 3' | -61.9 | NC_006552.1 | + | 47950 | 0.67 | 0.308791 |
Target: 5'- -gGCCcGCGCCugcaaGGUGaaaGCCGCAUAa- -3' miRNA: 3'- uaCGGuCGCGG-----CCACg--CGGCGUGUac -5' |
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30819 | 3' | -61.9 | NC_006552.1 | + | 26710 | 0.67 | 0.316224 |
Target: 5'- -cGCCcagGGCGCCGaagGCGUCGC-CGUGc -3' miRNA: 3'- uaCGG---UCGCGGCca-CGCGGCGuGUAC- -5' |
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30819 | 3' | -61.9 | NC_006552.1 | + | 52941 | 0.67 | 0.316224 |
Target: 5'- -cGCCuGCGCCGGcGCccGCCGC-CGg- -3' miRNA: 3'- uaCGGuCGCGGCCaCG--CGGCGuGUac -5' |
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30819 | 3' | -61.9 | NC_006552.1 | + | 52321 | 0.67 | 0.323792 |
Target: 5'- -aGCCAccucGCGCCGGccaCGCCgGCACAg- -3' miRNA: 3'- uaCGGU----CGCGGCCac-GCGG-CGUGUac -5' |
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30819 | 3' | -61.9 | NC_006552.1 | + | 63492 | 0.67 | 0.323792 |
Target: 5'- -cGCCGGCGCCGGaGCaaccggagacaCCGC-CAUGu -3' miRNA: 3'- uaCGGUCGCGGCCaCGc----------GGCGuGUAC- -5' |
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30819 | 3' | -61.9 | NC_006552.1 | + | 24735 | 0.67 | 0.331493 |
Target: 5'- -aGCCGGCGCCGG-GC-CUGCuCGg- -3' miRNA: 3'- uaCGGUCGCGGCCaCGcGGCGuGUac -5' |
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30819 | 3' | -61.9 | NC_006552.1 | + | 3589 | 0.67 | 0.339329 |
Target: 5'- -cGCCGGCGCCGGcagGacuuGCCGCuGCcUGc -3' miRNA: 3'- uaCGGUCGCGGCCa--Cg---CGGCG-UGuAC- -5' |
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30819 | 3' | -61.9 | NC_006552.1 | + | 62441 | 0.66 | 0.3554 |
Target: 5'- cGUGCCcgccggcguuccGGCGCCGcUGCGCCuCACcgaGUGg -3' miRNA: 3'- -UACGG------------UCGCGGCcACGCGGcGUG---UAC- -5' |
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30819 | 3' | -61.9 | NC_006552.1 | + | 19511 | 0.66 | 0.366965 |
Target: 5'- cUGCCGGagccacugauacuaGCCGacacGUGCGCCGCugAc- -3' miRNA: 3'- uACGGUCg-------------CGGC----CACGCGGCGugUac -5' |
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30819 | 3' | -61.9 | NC_006552.1 | + | 60544 | 0.66 | 0.371157 |
Target: 5'- -gGCCAGCaccguucGCCGGcgacuCGCCGCagGCAUGu -3' miRNA: 3'- uaCGGUCG-------CGGCCac---GCGGCG--UGUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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