miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3082 3' -56.9 NC_001493.1 + 14610 0.66 0.859088
Target:  5'- aGGGGGaggccGUGUUucCCUC-CAACCGGg -3'
miRNA:   3'- gCCCCC-----CACAGuaGGAGuGUUGGCUu -5'
3082 3' -56.9 NC_001493.1 + 130164 0.66 0.859088
Target:  5'- aGGGGGaggccGUGUUucCCUC-CAACCGGg -3'
miRNA:   3'- gCCCCC-----CACAGuaGGAGuGUUGGCUu -5'
3082 3' -56.9 NC_001493.1 + 22465 0.66 0.85126
Target:  5'- aCGGGGGuuguGUGUCGgguuUCCUCGuguCCGAu -3'
miRNA:   3'- -GCCCCC----CACAGU----AGGAGUguuGGCUu -5'
3082 3' -56.9 NC_001493.1 + 18806 0.66 0.835007
Target:  5'- gCGGGGGGUgagacucggGUCGcUCgaCGCGGCCGu- -3'
miRNA:   3'- -GCCCCCCA---------CAGU-AGgaGUGUUGGCuu -5'
3082 3' -56.9 NC_001493.1 + 89556 0.68 0.763189
Target:  5'- aGGGGGGguugGUCcgCacggUCACGagACCGAAc -3'
miRNA:   3'- gCCCCCCa---CAGuaGg---AGUGU--UGGCUU- -5'
3082 3' -56.9 NC_001493.1 + 39882 0.68 0.714192
Target:  5'- uCGGGGGGUuuuUCAaCCUCACcGCCu-- -3'
miRNA:   3'- -GCCCCCCAc--AGUaGGAGUGuUGGcuu -5'
3082 3' -56.9 NC_001493.1 + 9113 0.69 0.704144
Target:  5'- aCGGGagccgcGGG-GUCAUCCcCGCGACCGc- -3'
miRNA:   3'- -GCCC------CCCaCAGUAGGaGUGUUGGCuu -5'
3082 3' -56.9 NC_001493.1 + 124668 0.69 0.704144
Target:  5'- aCGGGagccgcGGG-GUCAUCCcCGCGACCGc- -3'
miRNA:   3'- -GCCC------CCCaCAGUAGGaGUGUUGGCuu -5'
3082 3' -56.9 NC_001493.1 + 49933 0.69 0.704144
Target:  5'- aGGGGGGuUGUaCAccaCCgucagCACGGCCGAGa -3'
miRNA:   3'- gCCCCCC-ACA-GUa--GGa----GUGUUGGCUU- -5'
3082 3' -56.9 NC_001493.1 + 43457 0.69 0.673664
Target:  5'- cCGGGGGGUcg-AUCUgCGCGGCCGAu -3'
miRNA:   3'- -GCCCCCCAcagUAGGaGUGUUGGCUu -5'
3082 3' -56.9 NC_001493.1 + 52091 0.71 0.581278
Target:  5'- gCGGGGGGUGUUccggGUguagcUCUCACuacauACCGAAa -3'
miRNA:   3'- -GCCCCCCACAG----UA-----GGAGUGu----UGGCUU- -5'
3082 3' -56.9 NC_001493.1 + 8588 0.74 0.391937
Target:  5'- gGGGGGGUGcCcggGUCCacagcCGCAGCCGAAg -3'
miRNA:   3'- gCCCCCCACaG---UAGGa----GUGUUGGCUU- -5'
3082 3' -56.9 NC_001493.1 + 124143 0.74 0.391937
Target:  5'- gGGGGGGUGcCcggGUCCacagcCGCAGCCGAAg -3'
miRNA:   3'- gCCCCCCACaG---UAGGa----GUGUUGGCUU- -5'
3082 3' -56.9 NC_001493.1 + 60474 1.07 0.002807
Target:  5'- aCGGGGGGUGUCAUCCUCACAACCGAAg -3'
miRNA:   3'- -GCCCCCCACAGUAGGAGUGUUGGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.