miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3082 5' -53.2 NC_001493.1 + 3201 0.66 0.965455
Target:  5'- --cCCGGac--GAGGUCGAGGauGCCAUc -3'
miRNA:   3'- cuaGGCCacuaCUCCAGCUCU--UGGUG- -5'
3082 5' -53.2 NC_001493.1 + 118755 0.66 0.965455
Target:  5'- --cCCGGac--GAGGUCGAGGauGCCAUc -3'
miRNA:   3'- cuaGGCCacuaCUCCAGCUCU--UGGUG- -5'
3082 5' -53.2 NC_001493.1 + 104564 0.66 0.957972
Target:  5'- uAUUCGGgagGAUGGGGUuauccuaCGAGaAACCAUc -3'
miRNA:   3'- cUAGGCCa--CUACUCCA-------GCUC-UUGGUG- -5'
3082 5' -53.2 NC_001493.1 + 124454 0.67 0.931267
Target:  5'- gGGUCCGG-GGUcaacGuGGUCGAaGAGCCGg -3'
miRNA:   3'- -CUAGGCCaCUA----CuCCAGCU-CUUGGUg -5'
3082 5' -53.2 NC_001493.1 + 8900 0.67 0.931267
Target:  5'- gGGUCCGG-GGUcaacGuGGUCGAaGAGCCGg -3'
miRNA:   3'- -CUAGGCCaCUA----CuCCAGCU-CUUGGUg -5'
3082 5' -53.2 NC_001493.1 + 22208 0.67 0.925881
Target:  5'- cGAUCCcGUuauccauuUGAGGUCG-GAACCGCc -3'
miRNA:   3'- -CUAGGcCAcu------ACUCCAGCuCUUGGUG- -5'
3082 5' -53.2 NC_001493.1 + 94507 0.68 0.908208
Target:  5'- --cCCGGggccGUGAGGUCGu--ACCACg -3'
miRNA:   3'- cuaGGCCac--UACUCCAGCucuUGGUG- -5'
3082 5' -53.2 NC_001493.1 + 91122 0.68 0.908208
Target:  5'- uGAUCUgggGGUGAucgauccguuUGAuGUCGGGGACCAUg -3'
miRNA:   3'- -CUAGG---CCACU----------ACUcCAGCUCUUGGUG- -5'
3082 5' -53.2 NC_001493.1 + 87546 0.68 0.901818
Target:  5'- --cCCGGUGGUGccGGUCGcGGGCuCACc -3'
miRNA:   3'- cuaGGCCACUACu-CCAGCuCUUG-GUG- -5'
3082 5' -53.2 NC_001493.1 + 81950 0.68 0.901818
Target:  5'- --cCCGGUGAUGAucuccGUCGcgcGAGCCAUg -3'
miRNA:   3'- cuaGGCCACUACUc----CAGCu--CUUGGUG- -5'
3082 5' -53.2 NC_001493.1 + 89500 0.68 0.895182
Target:  5'- gGAUCUGGUGAUG-GGUggaUGGGGGgCAUa -3'
miRNA:   3'- -CUAGGCCACUACuCCA---GCUCUUgGUG- -5'
3082 5' -53.2 NC_001493.1 + 45657 0.69 0.881186
Target:  5'- ---aCGGUGGguggGGGGUCGAccACCACc -3'
miRNA:   3'- cuagGCCACUa---CUCCAGCUcuUGGUG- -5'
3082 5' -53.2 NC_001493.1 + 24169 0.69 0.861601
Target:  5'- --aCCGGUugacggugggguccaGGUGGGG-CGAGAACCGa -3'
miRNA:   3'- cuaGGCCA---------------CUACUCCaGCUCUUGGUg -5'
3082 5' -53.2 NC_001493.1 + 82113 0.7 0.816354
Target:  5'- gGAUCgCGGUGGgaUGAGGcUCGAGGucuuCCAg -3'
miRNA:   3'- -CUAG-GCCACU--ACUCC-AGCUCUu---GGUg -5'
3082 5' -53.2 NC_001493.1 + 3891 0.71 0.788909
Target:  5'- cGUCCGG-GGUGAGGuggcaucgccuaUCGAcGAGCUACu -3'
miRNA:   3'- cUAGGCCaCUACUCC------------AGCU-CUUGGUG- -5'
3082 5' -53.2 NC_001493.1 + 119445 0.71 0.788909
Target:  5'- cGUCCGG-GGUGAGGuggcaucgccuaUCGAcGAGCUACu -3'
miRNA:   3'- cUAGGCCaCUACUCC------------AGCU-CUUGGUG- -5'
3082 5' -53.2 NC_001493.1 + 129381 0.73 0.657912
Target:  5'- uGGUCCaggggGGUGAaugagcGGGGUCGuAGAACCGCg -3'
miRNA:   3'- -CUAGG-----CCACUa-----CUCCAGC-UCUUGGUG- -5'
3082 5' -53.2 NC_001493.1 + 13827 0.73 0.657912
Target:  5'- uGGUCCaggggGGUGAaugagcGGGGUCGuAGAACCGCg -3'
miRNA:   3'- -CUAGG-----CCACUa-----CUCCAGC-UCUUGGUG- -5'
3082 5' -53.2 NC_001493.1 + 60514 1.1 0.003837
Target:  5'- gGAUCCGGUGAUGAGGUCGAGAACCACg -3'
miRNA:   3'- -CUAGGCCACUACUCCAGCUCUUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.