miRNA display CGI


Results 1 - 20 of 26 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30821 3' -56.9 NC_006552.1 + 27902 0.82 0.066842
Target:  5'- --cCGUCGGCUcCUCGAUGUCCGGCGc -3'
miRNA:   3'- gaaGCGGCCGGuGAGUUACAGGCCGU- -5'
30821 3' -56.9 NC_006552.1 + 59678 0.76 0.180551
Target:  5'- -cUCGCCGGCCAacggCGGUGaUCGGCAa -3'
miRNA:   3'- gaAGCGGCCGGUga--GUUACaGGCCGU- -5'
30821 3' -56.9 NC_006552.1 + 53593 0.76 0.195442
Target:  5'- --gCGCCGGCCAgUUCGGUGccgCCGGCu -3'
miRNA:   3'- gaaGCGGCCGGU-GAGUUACa--GGCCGu -5'
30821 3' -56.9 NC_006552.1 + 10395 0.72 0.339609
Target:  5'- -aUCGCCgaGGCCAcCUCGGUG-CgCGGCAu -3'
miRNA:   3'- gaAGCGG--CCGGU-GAGUUACaG-GCCGU- -5'
30821 3' -56.9 NC_006552.1 + 23341 0.72 0.347724
Target:  5'- -aUCGCCGGCUGCUCc-UG-CCGGUc -3'
miRNA:   3'- gaAGCGGCCGGUGAGuuACaGGCCGu -5'
30821 3' -56.9 NC_006552.1 + 21170 0.71 0.355978
Target:  5'- --gCGCaucCGGCCGCgUCGGUG-CCGGCAc -3'
miRNA:   3'- gaaGCG---GCCGGUG-AGUUACaGGCCGU- -5'
30821 3' -56.9 NC_006552.1 + 13950 0.71 0.372894
Target:  5'- -gUCGCgGGCCACgUCGAUGUa-GGCu -3'
miRNA:   3'- gaAGCGgCCGGUG-AGUUACAggCCGu -5'
30821 3' -56.9 NC_006552.1 + 20658 0.71 0.402881
Target:  5'- gUUCGCgGGCaCgggcgaacagcgccuGCUCGAUGggcgCCGGCAg -3'
miRNA:   3'- gAAGCGgCCG-G---------------UGAGUUACa---GGCCGU- -5'
30821 3' -56.9 NC_006552.1 + 52330 0.7 0.417511
Target:  5'- --gCGCCGGCCACg------CCGGCAc -3'
miRNA:   3'- gaaGCGGCCGGUGaguuacaGGCCGU- -5'
30821 3' -56.9 NC_006552.1 + 60554 0.69 0.475115
Target:  5'- gUUCGCCGGCgACUCGccG-CaGGCAu -3'
miRNA:   3'- gAAGCGGCCGgUGAGUuaCaGgCCGU- -5'
30821 3' -56.9 NC_006552.1 + 32700 0.69 0.495187
Target:  5'- -gUCGCCGGCCGg-CGcgGggCCGGUg -3'
miRNA:   3'- gaAGCGGCCGGUgaGUuaCa-GGCCGu -5'
30821 3' -56.9 NC_006552.1 + 61677 0.69 0.505367
Target:  5'- --cCGCCgcacggaccuGGCCGCUCGAccacgCCGGCAu -3'
miRNA:   3'- gaaGCGG----------CCGGUGAGUUaca--GGCCGU- -5'
30821 3' -56.9 NC_006552.1 + 12619 0.68 0.515636
Target:  5'- -gUCGCCGGCCGuagucUGcCCGGCGc -3'
miRNA:   3'- gaAGCGGCCGGUgaguuACaGGCCGU- -5'
30821 3' -56.9 NC_006552.1 + 10637 0.68 0.536417
Target:  5'- -cUCaCCGGCCACggCGAUG-CUGGCc -3'
miRNA:   3'- gaAGcGGCCGGUGa-GUUACaGGCCGu -5'
30821 3' -56.9 NC_006552.1 + 21645 0.68 0.536417
Target:  5'- aUUCuGCCGGCCACcggcuggcugUCAccGUCCaGCGc -3'
miRNA:   3'- gAAG-CGGCCGGUG----------AGUuaCAGGcCGU- -5'
30821 3' -56.9 NC_006552.1 + 22121 0.68 0.545865
Target:  5'- gCUUCGUCGGCCACcguggCAccGUCCaccgucaGGCc -3'
miRNA:   3'- -GAAGCGGCCGGUGa----GUuaCAGG-------CCGu -5'
30821 3' -56.9 NC_006552.1 + 43231 0.67 0.589492
Target:  5'- uUUCaGCCGGCCAagcgcuuggaaUCGAUG-CUGGCu -3'
miRNA:   3'- gAAG-CGGCCGGUg----------AGUUACaGGCCGu -5'
30821 3' -56.9 NC_006552.1 + 41544 0.67 0.589492
Target:  5'- -cUCGCCGGCauaguguGCUCAGggucaucggGUaCCGGCu -3'
miRNA:   3'- gaAGCGGCCGg------UGAGUUa--------CA-GGCCGu -5'
30821 3' -56.9 NC_006552.1 + 19556 0.67 0.600242
Target:  5'- --gCGCCGGCCGCUagcUGagCGGUg -3'
miRNA:   3'- gaaGCGGCCGGUGAguuACagGCCGu -5'
30821 3' -56.9 NC_006552.1 + 44085 0.67 0.600242
Target:  5'- uCUUCGCCGcCgCGCUCu-UGgCCGGCGc -3'
miRNA:   3'- -GAAGCGGCcG-GUGAGuuACaGGCCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.