miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30822 5' -58.2 NC_006552.1 + 57800 0.66 0.633461
Target:  5'- uCCUCcAGUGgGGCCCCcuGAUCGCGa-- -3'
miRNA:   3'- -GGAGcUCGCgUCGGGG--UUGGUGCagu -5'
30822 5' -58.2 NC_006552.1 + 24880 0.66 0.633461
Target:  5'- gCUCGAGCacCAGgaugcgaaacaCCCCGcCCAUGUCGa -3'
miRNA:   3'- gGAGCUCGc-GUC-----------GGGGUuGGUGCAGU- -5'
30822 5' -58.2 NC_006552.1 + 52988 0.66 0.601603
Target:  5'- -aUCGAgcGCGCAGCcugaugCCCAACCACu--- -3'
miRNA:   3'- ggAGCU--CGCGUCG------GGGUUGGUGcagu -5'
30822 5' -58.2 NC_006552.1 + 58421 0.66 0.601603
Target:  5'- aCCgCGAGUGCcaGGCCUCGAUCAgccgcuuggcacCGUCGu -3'
miRNA:   3'- -GGaGCUCGCG--UCGGGGUUGGU------------GCAGU- -5'
30822 5' -58.2 NC_006552.1 + 7287 0.66 0.601603
Target:  5'- uCCUCuGcGCGCuuuaauGCCCgGGCCAgGUCc -3'
miRNA:   3'- -GGAG-CuCGCGu-----CGGGgUUGGUgCAGu -5'
30822 5' -58.2 NC_006552.1 + 28203 0.68 0.487152
Target:  5'- uCCUCG-GCGUucGCCCCGAaggucgcgaccucCgGCGUCAc -3'
miRNA:   3'- -GGAGCuCGCGu-CGGGGUU-------------GgUGCAGU- -5'
30822 5' -58.2 NC_006552.1 + 20185 0.68 0.484187
Target:  5'- aCCUCGAcGCGCugcugguugaucuGCCCCAgcGCCACc--- -3'
miRNA:   3'- -GGAGCU-CGCGu------------CGGGGU--UGGUGcagu -5'
30822 5' -58.2 NC_006552.1 + 21148 0.69 0.462719
Target:  5'- --aCGGGCgGCGGCgacgcgauaggcgcaUCCGGCCGCGUCGg -3'
miRNA:   3'- ggaGCUCG-CGUCG---------------GGGUUGGUGCAGU- -5'
30822 5' -58.2 NC_006552.1 + 26454 0.69 0.45887
Target:  5'- uCCUgGGggccGCGCAGCCacgccaCAGCCGCGcCGu -3'
miRNA:   3'- -GGAgCU----CGCGUCGGg-----GUUGGUGCaGU- -5'
30822 5' -58.2 NC_006552.1 + 57249 0.69 0.43056
Target:  5'- gCCUCGAGCGgAacGCCCUcGCCgACGgcgCAc -3'
miRNA:   3'- -GGAGCUCGCgU--CGGGGuUGG-UGCa--GU- -5'
30822 5' -58.2 NC_006552.1 + 15986 0.69 0.429634
Target:  5'- gCUgGAGCGCGGCCugcugcaCCAA-CugGUCAg -3'
miRNA:   3'- gGAgCUCGCGUCGG-------GGUUgGugCAGU- -5'
30822 5' -58.2 NC_006552.1 + 22537 0.7 0.403301
Target:  5'- aUCggCGAGCGCGGuaugcCCCCAGCgGCGgcgCAg -3'
miRNA:   3'- -GGa-GCUCGCGUC-----GGGGUUGgUGCa--GU- -5'
30822 5' -58.2 NC_006552.1 + 42752 0.7 0.385746
Target:  5'- gCUCGAcGCGCAGCaCCAGCaaguCGUCc -3'
miRNA:   3'- gGAGCU-CGCGUCGgGGUUGgu--GCAGu -5'
30822 5' -58.2 NC_006552.1 + 10407 0.7 0.374609
Target:  5'- aCCUCGGuGCGCGGCauguuggccugaacCUCAACUugGUUAc -3'
miRNA:   3'- -GGAGCU-CGCGUCG--------------GGGUUGGugCAGU- -5'
30822 5' -58.2 NC_006552.1 + 63132 0.71 0.31322
Target:  5'- -aUCGAGCGCGGCgaacaCCCGcacACCGCGgagCAg -3'
miRNA:   3'- ggAGCUCGCGUCG-----GGGU---UGGUGCa--GU- -5'
30822 5' -58.2 NC_006552.1 + 6633 0.74 0.220075
Target:  5'- -aUCGAGCGgAGCCCCAGgcagcccggacaccCCGCGaUCAa -3'
miRNA:   3'- ggAGCUCGCgUCGGGGUU--------------GGUGC-AGU- -5'
30822 5' -58.2 NC_006552.1 + 22658 0.78 0.117779
Target:  5'- uUCUCGGGCGagaAGCCCCAguACCACGa-- -3'
miRNA:   3'- -GGAGCUCGCg--UCGGGGU--UGGUGCagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.