miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30823 5' -51.1 NC_006552.1 + 62085 0.66 0.931141
Target:  5'- cUGGugGUgcaugaggaugGCCgGCA-GAUCGGCgUCg -3'
miRNA:   3'- -ACUugCAa----------CGGgUGUaCUAGCCGaAG- -5'
30823 5' -51.1 NC_006552.1 + 50167 0.66 0.925337
Target:  5'- -aGGCGUacUGCgCGC-UGGUCGGCUa- -3'
miRNA:   3'- acUUGCA--ACGgGUGuACUAGCCGAag -5'
30823 5' -51.1 NC_006552.1 + 21039 0.66 0.919241
Target:  5'- --cAUGUcGCCCACAUccaGGUCGGCc-- -3'
miRNA:   3'- acuUGCAaCGGGUGUA---CUAGCCGaag -5'
30823 5' -51.1 NC_006552.1 + 36143 0.66 0.912855
Target:  5'- ---gUGUUGUCUGCcUGAUCGGCggCa -3'
miRNA:   3'- acuuGCAACGGGUGuACUAGCCGaaG- -5'
30823 5' -51.1 NC_006552.1 + 35661 0.66 0.912855
Target:  5'- aGGugGgcGCUCGCGgcgcucUCGGCUUCc -3'
miRNA:   3'- aCUugCaaCGGGUGUacu---AGCCGAAG- -5'
30823 5' -51.1 NC_006552.1 + 58546 0.66 0.90618
Target:  5'- cUGAGCcGcUGCCCACuGUGAcugCGGCa-- -3'
miRNA:   3'- -ACUUG-CaACGGGUG-UACUa--GCCGaag -5'
30823 5' -51.1 NC_006552.1 + 45207 0.67 0.884454
Target:  5'- gGcGCGUcggccugGCCCACAcGAUCGaucaGCUUCg -3'
miRNA:   3'- aCuUGCAa------CGGGUGUaCUAGC----CGAAG- -5'
30823 5' -51.1 NC_006552.1 + 56830 0.7 0.764884
Target:  5'- gGAugGUUGUCCGCAgcuuccaggGAUuCGGCa-- -3'
miRNA:   3'- aCUugCAACGGGUGUa--------CUA-GCCGaag -5'
30823 5' -51.1 NC_006552.1 + 25820 0.72 0.610055
Target:  5'- cGAGCac-GCCCGCAUGAaccUCGGCg-- -3'
miRNA:   3'- aCUUGcaaCGGGUGUACU---AGCCGaag -5'
30823 5' -51.1 NC_006552.1 + 28765 0.74 0.489192
Target:  5'- cGAugG-UGCCCACuUGA-CGGUUUCg -3'
miRNA:   3'- aCUugCaACGGGUGuACUaGCCGAAG- -5'
30823 5' -51.1 NC_006552.1 + 49800 0.75 0.458078
Target:  5'- uUGAACug-GCCUAUgcGGUCGGCUUCa -3'
miRNA:   3'- -ACUUGcaaCGGGUGuaCUAGCCGAAG- -5'
30823 5' -51.1 NC_006552.1 + 34270 0.83 0.159182
Target:  5'- uUGAugGUgucGCCCGCGUagaagcgGAUCGGCUUCg -3'
miRNA:   3'- -ACUugCAa--CGGGUGUA-------CUAGCCGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.