Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30824 | 3' | -56.4 | NC_006552.1 | + | 26638 | 0.66 | 0.694384 |
Target: 5'- aCAGGUCCccuUCGCCgaucugUGC-GaGCGGcUCg -3' miRNA: 3'- aGUCCAGGu--AGUGGa-----ACGaC-CGCC-AG- -5' |
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30824 | 3' | -56.4 | NC_006552.1 | + | 21509 | 0.67 | 0.607487 |
Target: 5'- gUAGGUCgCugcgcugcCGCUUUGCgUGGUGGUCa -3' miRNA: 3'- aGUCCAG-Gua------GUGGAACG-ACCGCCAG- -5' |
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30824 | 3' | -56.4 | NC_006552.1 | + | 56046 | 0.68 | 0.521822 |
Target: 5'- cUCAGGcUCCGaCACCcUGCUGauccaCGGUCu -3' miRNA: 3'- -AGUCC-AGGUaGUGGaACGACc----GCCAG- -5' |
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30824 | 3' | -56.4 | NC_006552.1 | + | 15248 | 0.69 | 0.511407 |
Target: 5'- uUCGGGaaaggcgUCGUCuGCCguccgcUGCUGGUGGUCa -3' miRNA: 3'- -AGUCCa------GGUAG-UGGa-----ACGACCGCCAG- -5' |
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30824 | 3' | -56.4 | NC_006552.1 | + | 5427 | 0.69 | 0.480709 |
Target: 5'- aUCAGGcugcgcgCCAguuguUCGCCgcGCUGGCGGg- -3' miRNA: 3'- -AGUCCa------GGU-----AGUGGaaCGACCGCCag -5' |
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30824 | 3' | -56.4 | NC_006552.1 | + | 15192 | 0.73 | 0.311427 |
Target: 5'- aCAGGUCCAcgGCCUUGaUGGUgccGGUCg -3' miRNA: 3'- aGUCCAGGUagUGGAACgACCG---CCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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