Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30824 | 5' | -53.8 | NC_006552.1 | + | 2759 | 0.71 | 0.490372 |
Target: 5'- cAGGCUGGUucgAGUGGguGGCCGAggGCGg -3' miRNA: 3'- aUCUGGCCA---UCGUCuuUCGGCUa-CGC- -5' |
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30824 | 5' | -53.8 | NC_006552.1 | + | 4704 | 0.7 | 0.554289 |
Target: 5'- gAGAauuuucuuCCGGUAGUAGcccguAGGCCGAgGCGg -3' miRNA: 3'- aUCU--------GGCCAUCGUCu----UUCGGCUaCGC- -5' |
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30824 | 5' | -53.8 | NC_006552.1 | + | 25293 | 0.7 | 0.598248 |
Target: 5'- aUGGACCgGGUAGCGGu--GUCGGUcgGCGu -3' miRNA: 3'- -AUCUGG-CCAUCGUCuuuCGGCUA--CGC- -5' |
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30824 | 5' | -53.8 | NC_006552.1 | + | 31280 | 0.68 | 0.675918 |
Target: 5'- cAGGCCGGUAGCcGu--GUCGAUGa- -3' miRNA: 3'- aUCUGGCCAUCGuCuuuCGGCUACgc -5' |
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30824 | 5' | -53.8 | NC_006552.1 | + | 58647 | 0.68 | 0.708783 |
Target: 5'- -cGACCGG--GCGacGAGCCGAUGUa -3' miRNA: 3'- auCUGGCCauCGUcuUUCGGCUACGc -5' |
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30824 | 5' | -53.8 | NC_006552.1 | + | 29668 | 0.68 | 0.7196 |
Target: 5'- gUAG-CCGGggucaacAGUAGAGAagucgagauccGCCGAUGCGu -3' miRNA: 3'- -AUCuGGCCa------UCGUCUUU-----------CGGCUACGC- -5' |
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30824 | 5' | -53.8 | NC_006552.1 | + | 4355 | 0.67 | 0.751474 |
Target: 5'- -cGGCCGucAGCAGAGAuuuGCCGAUGaCa -3' miRNA: 3'- auCUGGCcaUCGUCUUU---CGGCUAC-Gc -5' |
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30824 | 5' | -53.8 | NC_006552.1 | + | 49938 | 0.67 | 0.761867 |
Target: 5'- cGGGCCGGccgagacGCAGcuAGCCGcUGUGa -3' miRNA: 3'- aUCUGGCCau-----CGUCuuUCGGCuACGC- -5' |
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30824 | 5' | -53.8 | NC_006552.1 | + | 59614 | 0.67 | 0.772124 |
Target: 5'- cAGGCCGccUGGCAGAAcucgGGCCGGgagGUGc -3' miRNA: 3'- aUCUGGCc-AUCGUCUU----UCGGCUa--CGC- -5' |
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30824 | 5' | -53.8 | NC_006552.1 | + | 27363 | 0.66 | 0.782233 |
Target: 5'- cGGGCCaGGagccGGCAGAccagcAGGCCGAacuguuUGCGg -3' miRNA: 3'- aUCUGG-CCa---UCGUCU-----UUCGGCU------ACGC- -5' |
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30824 | 5' | -53.8 | NC_006552.1 | + | 7619 | 0.66 | 0.782233 |
Target: 5'- cAGACCGGcGGCGGuuuGCCGc-GCa -3' miRNA: 3'- aUCUGGCCaUCGUCuuuCGGCuaCGc -5' |
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30824 | 5' | -53.8 | NC_006552.1 | + | 38834 | 0.66 | 0.811562 |
Target: 5'- aAGAaCGGcacgUAGgGGAAGuGCCGGUGCGu -3' miRNA: 3'- aUCUgGCC----AUCgUCUUU-CGGCUACGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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