miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30825 3' -62.8 NC_006552.1 + 34609 0.66 0.389593
Target:  5'- gCAUUCGGCGCaacgccAGUGaUGGCaUCGGCg- -3'
miRNA:   3'- -GUGGGCCGCG------UCGC-ACCGaAGCCGgu -5'
30825 3' -62.8 NC_006552.1 + 40363 0.66 0.389593
Target:  5'- aACCagauGGCGCAGCcaucGCUgCGGCCGa -3'
miRNA:   3'- gUGGg---CCGCGUCGcac-CGAaGCCGGU- -5'
30825 3' -62.8 NC_006552.1 + 39287 0.66 0.356425
Target:  5'- gCugCCGGCGCAGgaaGcGGCa--GGCCu -3'
miRNA:   3'- -GugGGCCGCGUCg--CaCCGaagCCGGu -5'
30825 3' -62.8 NC_006552.1 + 14300 0.68 0.262788
Target:  5'- gUAUUCGGCGCgGGCcugGGCcUCGGCCu -3'
miRNA:   3'- -GUGGGCCGCG-UCGca-CCGaAGCCGGu -5'
30825 3' -62.8 NC_006552.1 + 34279 0.69 0.244236
Target:  5'- uCGCCC-GCGUagaAGCGgaucGGCUUCGGCa- -3'
miRNA:   3'- -GUGGGcCGCG---UCGCa---CCGAAGCCGgu -5'
30825 3' -62.8 NC_006552.1 + 60285 0.69 0.244236
Target:  5'- cCACCCGGC-UGGCccugGGCaUCGGCCc -3'
miRNA:   3'- -GUGGGCCGcGUCGca--CCGaAGCCGGu -5'
30825 3' -62.8 NC_006552.1 + 1980 0.69 0.244236
Target:  5'- gCACCCGaGCGaCAGCGcugGGCUgcaUCaGCCu -3'
miRNA:   3'- -GUGGGC-CGC-GUCGCa--CCGA---AGcCGGu -5'
30825 3' -62.8 NC_006552.1 + 32097 0.69 0.240659
Target:  5'- gCACCaGGCGCAGCGaagugucgcccuggaUGGCguacagCGGCUu -3'
miRNA:   3'- -GUGGgCCGCGUCGC---------------ACCGaa----GCCGGu -5'
30825 3' -62.8 NC_006552.1 + 35927 0.69 0.221207
Target:  5'- cUugCCuGCGCGGCcugGGCUUgGGCCu -3'
miRNA:   3'- -GugGGcCGCGUCGca-CCGAAgCCGGu -5'
30825 3' -62.8 NC_006552.1 + 12938 0.7 0.210402
Target:  5'- aGCUCGGC-CAGCGcgcUGGCcUUGGCCu -3'
miRNA:   3'- gUGGGCCGcGUCGC---ACCGaAGCCGGu -5'
30825 3' -62.8 NC_006552.1 + 9811 0.7 0.190153
Target:  5'- aCugCCGGCGCGGUcaccgGGUccagaUUCGGCCc -3'
miRNA:   3'- -GugGGCCGCGUCGca---CCG-----AAGCCGGu -5'
30825 3' -62.8 NC_006552.1 + 12635 0.71 0.176109
Target:  5'- uGCCCGGCGCuggcuacGCG-GGUcUUGGCCu -3'
miRNA:   3'- gUGGGCCGCGu------CGCaCCGaAGCCGGu -5'
30825 3' -62.8 NC_006552.1 + 13697 0.71 0.167266
Target:  5'- cCGCCUGGCGCAcGCGauccugauUGGCcUUCuGCCAg -3'
miRNA:   3'- -GUGGGCCGCGU-CGC--------ACCG-AAGcCGGU- -5'
30825 3' -62.8 NC_006552.1 + 5812 0.72 0.146879
Target:  5'- gCGCCCgcaagGGCGCcagccAGCGUGGUcuugUUGGCCAc -3'
miRNA:   3'- -GUGGG-----CCGCG-----UCGCACCGa---AGCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.