miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30826 3' -53.6 NC_006552.1 + 25486 0.66 0.803511
Target:  5'- gGAUG-UGCGCCAggCC-CUcGGUGGg -3'
miRNA:   3'- aCUACuGCGCGGUaaGGuGGaCCAUC- -5'
30826 3' -53.6 NC_006552.1 + 32758 0.67 0.783936
Target:  5'- ---cGACGCGCCAggUCGCCgGGc-- -3'
miRNA:   3'- acuaCUGCGCGGUaaGGUGGaCCauc -5'
30826 3' -53.6 NC_006552.1 + 4440 0.67 0.773904
Target:  5'- ---cGGCGUGCCcuugaCCaaaGCCUGGUAGa -3'
miRNA:   3'- acuaCUGCGCGGuaa--GG---UGGACCAUC- -5'
30826 3' -53.6 NC_006552.1 + 29351 0.68 0.732413
Target:  5'- uUGAUGAUGUucGCCugcCCGCuUUGGUAGg -3'
miRNA:   3'- -ACUACUGCG--CGGuaaGGUG-GACCAUC- -5'
30826 3' -53.6 NC_006552.1 + 31360 0.69 0.689298
Target:  5'- cGAUGcuCGCGCCGga-CACaCUGGUGa -3'
miRNA:   3'- aCUACu-GCGCGGUaagGUG-GACCAUc -5'
30826 3' -53.6 NC_006552.1 + 49400 0.69 0.645291
Target:  5'- cUGAUGACGCGCaguCAggCCuacGCCUGGc-- -3'
miRNA:   3'- -ACUACUGCGCG---GUaaGG---UGGACCauc -5'
30826 3' -53.6 NC_006552.1 + 63968 0.7 0.623172
Target:  5'- cUGGUGgcGCGCGCCAccaaCUACCUGGc-- -3'
miRNA:   3'- -ACUAC--UGCGCGGUaa--GGUGGACCauc -5'
30826 3' -53.6 NC_006552.1 + 19753 0.7 0.601084
Target:  5'- ----uGCGCGCCAggcUUCUACCUGGg-- -3'
miRNA:   3'- acuacUGCGCGGU---AAGGUGGACCauc -5'
30826 3' -53.6 NC_006552.1 + 4982 0.72 0.503971
Target:  5'- --uUGGCGUucGCCGcUCCACCUGGUc- -3'
miRNA:   3'- acuACUGCG--CGGUaAGGUGGACCAuc -5'
30826 3' -53.6 NC_006552.1 + 15640 0.72 0.473048
Target:  5'- cUGGUGGCGCuGCUcaUCCugCUGGUc- -3'
miRNA:   3'- -ACUACUGCG-CGGuaAGGugGACCAuc -5'
30826 3' -53.6 NC_006552.1 + 28674 0.72 0.462953
Target:  5'- gUGGUGAUcugcggcgGCGCCAcgCCGCCUGGc-- -3'
miRNA:   3'- -ACUACUG--------CGCGGUaaGGUGGACCauc -5'
30826 3' -53.6 NC_006552.1 + 53586 0.73 0.410511
Target:  5'- cGAUGugGCGCCGgccaguucggugCCGCCggcugaGGUGGa -3'
miRNA:   3'- aCUACugCGCGGUaa----------GGUGGa-----CCAUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.