miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30829 3' -57.6 NC_006552.1 + 35383 0.66 0.6554
Target:  5'- cCGAgagACUGGCCGGCGgUuCGgucUUGGCUUu -3'
miRNA:   3'- -GCU---UGACCGGCCGCgGuGU---AGCUGAG- -5'
30829 3' -57.6 NC_006552.1 + 53585 0.66 0.644701
Target:  5'- uCGAugUGGCgccggccaguuCGGUGCCGC--CGGCUg -3'
miRNA:   3'- -GCUugACCG-----------GCCGCGGUGuaGCUGAg -5'
30829 3' -57.6 NC_006552.1 + 22275 0.66 0.612574
Target:  5'- gGAGCcGGUCGcuCGCCGCAUCG-CUg -3'
miRNA:   3'- gCUUGaCCGGCc-GCGGUGUAGCuGAg -5'
30829 3' -57.6 NC_006552.1 + 36167 0.67 0.598684
Target:  5'- uCGGcGCUGGCCucgccagcaucgccGGCacCCGCGUCGGCUg -3'
miRNA:   3'- -GCU-UGACCGG--------------CCGc-GGUGUAGCUGAg -5'
30829 3' -57.6 NC_006552.1 + 44014 0.67 0.559458
Target:  5'- gCGAACcucGCCGGUGuCCGgGUCGAC-Ca -3'
miRNA:   3'- -GCUUGac-CGGCCGC-GGUgUAGCUGaG- -5'
30829 3' -57.6 NC_006552.1 + 13327 0.68 0.528189
Target:  5'- uCGGACUggGGCCGG-GCUGCAuccUCGGCa- -3'
miRNA:   3'- -GCUUGA--CCGGCCgCGGUGU---AGCUGag -5'
30829 3' -57.6 NC_006552.1 + 49801 0.68 0.528189
Target:  5'- uGAACUGGCCuaugcGGUcgGCUuCAUCGACa- -3'
miRNA:   3'- gCUUGACCGG-----CCG--CGGuGUAGCUGag -5'
30829 3' -57.6 NC_006552.1 + 32485 0.68 0.507705
Target:  5'- cCGAACUGGUCGaUGCgCGCGUgGACg- -3'
miRNA:   3'- -GCUUGACCGGCcGCG-GUGUAgCUGag -5'
30829 3' -57.6 NC_006552.1 + 59052 0.68 0.49759
Target:  5'- cCGAACacgaGGCUGGCGCUcugcGCGUCG-CUg -3'
miRNA:   3'- -GCUUGa---CCGGCCGCGG----UGUAGCuGAg -5'
30829 3' -57.6 NC_006552.1 + 21353 0.68 0.487566
Target:  5'- ---gUUGGUCGGCGCCGauUCGACg- -3'
miRNA:   3'- gcuuGACCGGCCGCGGUguAGCUGag -5'
30829 3' -57.6 NC_006552.1 + 44101 0.69 0.477638
Target:  5'- ---cUUGGCCGGCGCCugGgUUGAUa- -3'
miRNA:   3'- gcuuGACCGGCCGCGGugU-AGCUGag -5'
30829 3' -57.6 NC_006552.1 + 3583 0.69 0.438977
Target:  5'- cCGAGCc-GCCGGCGCCgGCAg-GACUUg -3'
miRNA:   3'- -GCUUGacCGGCCGCGG-UGUagCUGAG- -5'
30829 3' -57.6 NC_006552.1 + 59472 0.72 0.326885
Target:  5'- uGAgcuGCUGGUgaGGCGCCACuUCGGCg- -3'
miRNA:   3'- gCU---UGACCGg-CCGCGGUGuAGCUGag -5'
30829 3' -57.6 NC_006552.1 + 59753 0.75 0.214381
Target:  5'- aCGAACUGcucgaguaCGGCgGCCGCAUCGGCUUu -3'
miRNA:   3'- -GCUUGACcg------GCCG-CGGUGUAGCUGAG- -5'
30829 3' -57.6 NC_006552.1 + 62965 0.78 0.122697
Target:  5'- aCGAACUGGCCGGCGCCGuucuucugcCGGCg- -3'
miRNA:   3'- -GCUUGACCGGCCGCGGUgua------GCUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.