miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3083 3' -57.1 NC_001493.1 + 16220 0.67 0.798754
Target:  5'- gUGcACCUGGGUCGGGGauuccaggUGUGGCUAc- -3'
miRNA:   3'- -ACcUGGGUCCGGCCCU--------ACACUGAUag -5'
3083 3' -57.1 NC_001493.1 + 131774 0.67 0.798754
Target:  5'- gUGcACCUGGGUCGGGGauuccaggUGUGGCUAc- -3'
miRNA:   3'- -ACcUGGGUCCGGCCCU--------ACACUGAUag -5'
3083 3' -57.1 NC_001493.1 + 32097 0.67 0.780394
Target:  5'- uUGGAUCCAuggucGCCGGGAccGcGAUUGUCa -3'
miRNA:   3'- -ACCUGGGUc----CGGCCCUa-CaCUGAUAG- -5'
3083 3' -57.1 NC_001493.1 + 70680 0.67 0.751867
Target:  5'- -aGGCCCGGGCgGGGAUcccGGCggAUCa -3'
miRNA:   3'- acCUGGGUCCGgCCCUAca-CUGa-UAG- -5'
3083 3' -57.1 NC_001493.1 + 18763 0.68 0.7323
Target:  5'- gGGGCCCGuuccGGUguuauaCGGGGUGUGGCg--- -3'
miRNA:   3'- aCCUGGGU----CCG------GCCCUACACUGauag -5'
3083 3' -57.1 NC_001493.1 + 118919 0.68 0.7323
Target:  5'- aUGGACCagAGcGCCGGGGUGgUGAUc--- -3'
miRNA:   3'- -ACCUGGg-UC-CGGCCCUAC-ACUGauag -5'
3083 3' -57.1 NC_001493.1 + 3365 0.68 0.7323
Target:  5'- aUGGACCagAGcGCCGGGGUGgUGAUc--- -3'
miRNA:   3'- -ACCUGGg-UC-CGGCCCUAC-ACUGauag -5'
3083 3' -57.1 NC_001493.1 + 23632 0.68 0.712381
Target:  5'- aUGGGgCCGGGUcucugcggucauCGGcGGUGUGACgGUCg -3'
miRNA:   3'- -ACCUgGGUCCG------------GCC-CUACACUGaUAG- -5'
3083 3' -57.1 NC_001493.1 + 78671 0.68 0.702313
Target:  5'- gUGGACCCGGG-UGGGAUGgcauaGAgaaggUUAUCa -3'
miRNA:   3'- -ACCUGGGUCCgGCCCUACa----CU-----GAUAG- -5'
3083 3' -57.1 NC_001493.1 + 19170 0.68 0.702313
Target:  5'- cGGGCUCGcGGCgCGGGAgGUGGggAUCg -3'
miRNA:   3'- aCCUGGGU-CCG-GCCCUaCACUgaUAG- -5'
3083 3' -57.1 NC_001493.1 + 30491 0.69 0.671787
Target:  5'- gGGGCCCuGGUCGGGGg--GAUcggGUCg -3'
miRNA:   3'- aCCUGGGuCCGGCCCUacaCUGa--UAG- -5'
3083 3' -57.1 NC_001493.1 + 44461 0.72 0.509248
Target:  5'- gGGGCCUgcucGGGCCGGaGAUGguggcacGGCUAUUg -3'
miRNA:   3'- aCCUGGG----UCCGGCC-CUACa------CUGAUAG- -5'
3083 3' -57.1 NC_001493.1 + 61468 0.78 0.234454
Target:  5'- cGGAUCauagauGGCCuGGAUGUGGCUAUCg -3'
miRNA:   3'- aCCUGGgu----CCGGcCCUACACUGAUAG- -5'
3083 3' -57.1 NC_001493.1 + 61267 1.09 0.001933
Target:  5'- aUGGACCCAGGCCGGGAUGUGACUAUCc -3'
miRNA:   3'- -ACCUGGGUCCGGCCCUACACUGAUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.