miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3083 5' -52.9 NC_001493.1 + 77526 0.66 0.959228
Target:  5'- uGCcAUGGCCAUGUUCAGGCgGUa--- -3'
miRNA:   3'- -CGcUAUCGGUGUAGGUCCGgUAgaua -5'
3083 5' -52.9 NC_001493.1 + 96133 0.66 0.946729
Target:  5'- gGCGGgaguGaCCACGUCCAGGCaCGguUCUu- -3'
miRNA:   3'- -CGCUau--C-GGUGUAGGUCCG-GU--AGAua -5'
3083 5' -52.9 NC_001493.1 + 12956 0.66 0.942056
Target:  5'- gGCGcUGGCCGCcgCCGagucGCCAUCg-- -3'
miRNA:   3'- -CGCuAUCGGUGuaGGUc---CGGUAGaua -5'
3083 5' -52.9 NC_001493.1 + 21100 0.67 0.937126
Target:  5'- gGgGAUGGCgGCGcUCaAGGCCAUCg-- -3'
miRNA:   3'- -CgCUAUCGgUGU-AGgUCCGGUAGaua -5'
3083 5' -52.9 NC_001493.1 + 47364 0.67 0.920771
Target:  5'- cGCGGUuGcCCACAUCCgugaucgcagcgGGGUCAUCg-- -3'
miRNA:   3'- -CGCUAuC-GGUGUAGG------------UCCGGUAGaua -5'
3083 5' -52.9 NC_001493.1 + 19535 0.68 0.90141
Target:  5'- cGCGG-GGCgGCGUCgaucuuaCAGGCCAUCUc- -3'
miRNA:   3'- -CGCUaUCGgUGUAG-------GUCCGGUAGAua -5'
3083 5' -52.9 NC_001493.1 + 112853 0.68 0.895327
Target:  5'- cGgGAUcGCC-CGuuccUCCAGGCCAUCg-- -3'
miRNA:   3'- -CgCUAuCGGuGU----AGGUCCGGUAGaua -5'
3083 5' -52.9 NC_001493.1 + 101662 0.68 0.881086
Target:  5'- aCGAUGGCCAUcuUCCAGguGCCcgCUGg -3'
miRNA:   3'- cGCUAUCGGUGu-AGGUC--CGGuaGAUa -5'
3083 5' -52.9 NC_001493.1 + 27652 0.69 0.857926
Target:  5'- gGC-AUAGCCACAagCGGGUgCAUCUAUc -3'
miRNA:   3'- -CGcUAUCGGUGUagGUCCG-GUAGAUA- -5'
3083 5' -52.9 NC_001493.1 + 61427 0.69 0.84136
Target:  5'- -gGAUAGUCACAUCCcGGCCuggGUCc-- -3'
miRNA:   3'- cgCUAUCGGUGUAGGuCCGG---UAGaua -5'
3083 5' -52.9 NC_001493.1 + 133547 0.71 0.746504
Target:  5'- uCGAUcaguuucggGGCCGCGUCCaggaaauGGGCCGUCUc- -3'
miRNA:   3'- cGCUA---------UCGGUGUAGG-------UCCGGUAGAua -5'
3083 5' -52.9 NC_001493.1 + 17992 0.71 0.746504
Target:  5'- uCGAUcaguuucggGGCCGCGUCCaggaaauGGGCCGUCUc- -3'
miRNA:   3'- cGCUA---------UCGGUGUAGG-------UCCGGUAGAua -5'
3083 5' -52.9 NC_001493.1 + 98809 0.72 0.706305
Target:  5'- cCGAUAGCCACcucuUCCAGuGCCAcgacCUGUg -3'
miRNA:   3'- cGCUAUCGGUGu---AGGUC-CGGUa---GAUA- -5'
3083 5' -52.9 NC_001493.1 + 99983 0.73 0.663996
Target:  5'- aGCGAUacuauccaaGGCCAUggggAUCCAGGCCAguUUUAUg -3'
miRNA:   3'- -CGCUA---------UCGGUG----UAGGUCCGGU--AGAUA- -5'
3083 5' -52.9 NC_001493.1 + 61303 1.09 0.004085
Target:  5'- cGCGAUAGCCACAUCCAGGCCAUCUAUg -3'
miRNA:   3'- -CGCUAUCGGUGUAGGUCCGGUAGAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.