miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30830 5' -56.3 NC_006552.1 + 8120 0.66 0.683463
Target:  5'- -gGCCaugCAUCAGCCAucugcgcCAGGugGuCGc -3'
miRNA:   3'- aaCGGa--GUAGUCGGU-------GUCCugCuGCa -5'
30830 5' -56.3 NC_006552.1 + 13623 0.66 0.66272
Target:  5'- -cGCCUUGUCGG-CACGGGccugcuCGGCGg -3'
miRNA:   3'- aaCGGAGUAGUCgGUGUCCu-----GCUGCa -5'
30830 5' -56.3 NC_006552.1 + 35902 0.66 0.651757
Target:  5'- cUGCCUCAUC--CCGCAGG-CGuuGUa -3'
miRNA:   3'- aACGGAGUAGucGGUGUCCuGCugCA- -5'
30830 5' -56.3 NC_006552.1 + 8677 0.66 0.651757
Target:  5'- -cGCCagAUCAGCCGCAucGCuGGCGUa -3'
miRNA:   3'- aaCGGagUAGUCGGUGUccUG-CUGCA- -5'
30830 5' -56.3 NC_006552.1 + 12198 0.67 0.612213
Target:  5'- gUGCCUUGUCGGaCCGCGcagaggccucagcgcGGGCGGCc- -3'
miRNA:   3'- aACGGAGUAGUC-GGUGU---------------CCUGCUGca -5'
30830 5' -56.3 NC_006552.1 + 34488 0.67 0.59687
Target:  5'- -aGCCUCGUC-GCCcucgaacuucACGGGcgGCGGCGg -3'
miRNA:   3'- aaCGGAGUAGuCGG----------UGUCC--UGCUGCa -5'
30830 5' -56.3 NC_006552.1 + 61199 0.67 0.59687
Target:  5'- -cGCCgaUAUCGGCUGCuGGGGCGACa- -3'
miRNA:   3'- aaCGGa-GUAGUCGGUG-UCCUGCUGca -5'
30830 5' -56.3 NC_006552.1 + 52391 0.67 0.59687
Target:  5'- -cGCCUCAUUGGgCGCAGG-CaGugGUc -3'
miRNA:   3'- aaCGGAGUAGUCgGUGUCCuG-CugCA- -5'
30830 5' -56.3 NC_006552.1 + 28626 0.68 0.532061
Target:  5'- aUGCCUUc-CAGCgGCAGGuaACGGCGg -3'
miRNA:   3'- aACGGAGuaGUCGgUGUCC--UGCUGCa -5'
30830 5' -56.3 NC_006552.1 + 15175 0.68 0.532061
Target:  5'- -gGCauucugCAUCAGCCACAGGuccACGGCc- -3'
miRNA:   3'- aaCGga----GUAGUCGGUGUCC---UGCUGca -5'
30830 5' -56.3 NC_006552.1 + 13147 0.7 0.440317
Target:  5'- gUGCC-CAgcUCGGCCAcCAGGGCGucGCGg -3'
miRNA:   3'- aACGGaGU--AGUCGGU-GUCCUGC--UGCa -5'
30830 5' -56.3 NC_006552.1 + 58434 0.71 0.347316
Target:  5'- -gGCCUCgAUCAGCCGCuuGGcaccgucgucgcagGCGGCGUg -3'
miRNA:   3'- aaCGGAG-UAGUCGGUGu-CC--------------UGCUGCA- -5'
30830 5' -56.3 NC_006552.1 + 56959 0.73 0.28751
Target:  5'- -gGCCUCuAUCAccgagcGCCuACAGGGCGugGUg -3'
miRNA:   3'- aaCGGAG-UAGU------CGG-UGUCCUGCugCA- -5'
30830 5' -56.3 NC_006552.1 + 56457 0.82 0.067227
Target:  5'- aUGCCUCGUgGGCCgcccugucagGCAGGGCGGCGUc -3'
miRNA:   3'- aACGGAGUAgUCGG----------UGUCCUGCUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.