miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30834 5' -50.4 NC_006552.1 + 5607 0.66 0.955413
Target:  5'- aGGcUGA-CgGUC-AGCGCGGCAACCa -3'
miRNA:   3'- aCUaGCUaGaCAGcUCGUGUCGUUGG- -5'
30834 5' -50.4 NC_006552.1 + 32337 0.66 0.955413
Target:  5'- gGAUCagcCUGcCGcGCACGGCGGCUu -3'
miRNA:   3'- aCUAGcuaGACaGCuCGUGUCGUUGG- -5'
30834 5' -50.4 NC_006552.1 + 22534 0.66 0.951034
Target:  5'- ---gUGAUCgg-CGAGCGCGGUAugCc -3'
miRNA:   3'- acuaGCUAGacaGCUCGUGUCGUugG- -5'
30834 5' -50.4 NC_006552.1 + 6356 0.66 0.946378
Target:  5'- -cGUUGG--UGUCGAGCACcuuGUAGCCc -3'
miRNA:   3'- acUAGCUagACAGCUCGUGu--CGUUGG- -5'
30834 5' -50.4 NC_006552.1 + 37823 0.66 0.946378
Target:  5'- cUGcgCGAUCUGggCGccggccugcauGGCACugaauGCGGCCu -3'
miRNA:   3'- -ACuaGCUAGACa-GC-----------UCGUGu----CGUUGG- -5'
30834 5' -50.4 NC_006552.1 + 14887 0.67 0.934591
Target:  5'- gGAUCGGcaccgcuucguauuUCucggUGUUGAGCGCGuCAACCu -3'
miRNA:   3'- aCUAGCU--------------AG----ACAGCUCGUGUcGUUGG- -5'
30834 5' -50.4 NC_006552.1 + 28008 0.67 0.918813
Target:  5'- aUGAUgu-UCUGcggCGAGUACGGCGGCg -3'
miRNA:   3'- -ACUAgcuAGACa--GCUCGUGUCGUUGg -5'
30834 5' -50.4 NC_006552.1 + 52787 0.67 0.912436
Target:  5'- aGAUCGccgcccaggCUGUCGAuGCcaugcuCAGCGACUa -3'
miRNA:   3'- aCUAGCua-------GACAGCU-CGu-----GUCGUUGG- -5'
30834 5' -50.4 NC_006552.1 + 50066 0.68 0.905773
Target:  5'- aGcgCaGUCUGcaaUCGAGCGCGaCAACCg -3'
miRNA:   3'- aCuaGcUAGAC---AGCUCGUGUcGUUGG- -5'
30834 5' -50.4 NC_006552.1 + 50181 0.68 0.898826
Target:  5'- cUGGUCGGcuaUCUGcCGcAGCAUcGCAACg -3'
miRNA:   3'- -ACUAGCU---AGACaGC-UCGUGuCGUUGg -5'
30834 5' -50.4 NC_006552.1 + 34355 0.68 0.884098
Target:  5'- aGAUCGGgugCUGcuuggcguUCGAcgcgcgcgccaGUGCAGCAGCCu -3'
miRNA:   3'- aCUAGCUa--GAC--------AGCU-----------CGUGUCGUUGG- -5'
30834 5' -50.4 NC_006552.1 + 45744 0.68 0.876327
Target:  5'- aGAUCGAUCacacCGGcCGCAGCGAUCu -3'
miRNA:   3'- aCUAGCUAGaca-GCUcGUGUCGUUGG- -5'
30834 5' -50.4 NC_006552.1 + 458 0.68 0.876327
Target:  5'- aGAUCGAagUCUGcCG-GCGCAGCcuuUCg -3'
miRNA:   3'- aCUAGCU--AGACaGCuCGUGUCGuu-GG- -5'
30834 5' -50.4 NC_006552.1 + 63121 0.69 0.842684
Target:  5'- -aGUUGAUCcucaUCGAGCGCGGCGaacACCc -3'
miRNA:   3'- acUAGCUAGac--AGCUCGUGUCGU---UGG- -5'
30834 5' -50.4 NC_006552.1 + 17834 0.7 0.782473
Target:  5'- -uGUCGAUCUGgCGGGCAguuaacugcccguuCGGCgAACCg -3'
miRNA:   3'- acUAGCUAGACaGCUCGU--------------GUCG-UUGG- -5'
30834 5' -50.4 NC_006552.1 + 45228 0.71 0.764999
Target:  5'- cGAUCGAUCaGcuUCGAaaGCuugcCGGCAACCg -3'
miRNA:   3'- aCUAGCUAGaC--AGCU--CGu---GUCGUUGG- -5'
30834 5' -50.4 NC_006552.1 + 49217 0.74 0.599658
Target:  5'- gUGAUcuaCGGUCg--CGAGUACGGCGACUg -3'
miRNA:   3'- -ACUA---GCUAGacaGCUCGUGUCGUUGG- -5'
30834 5' -50.4 NC_006552.1 + 58883 0.76 0.490472
Target:  5'- aUGGaCGAUCcGaUGAGCACGGUAACCa -3'
miRNA:   3'- -ACUaGCUAGaCaGCUCGUGUCGUUGG- -5'
30834 5' -50.4 NC_006552.1 + 59753 0.77 0.410192
Target:  5'- ---aCGAaCUGcUCGAGUACGGCGGCCg -3'
miRNA:   3'- acuaGCUaGAC-AGCUCGUGUCGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.