miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30835 3' -50.5 NC_006552.1 + 51670 0.66 0.968271
Target:  5'- -aGGUCGacgccaucaaAGGGAUG-CCGGCCCAGGu -3'
miRNA:   3'- gcCCAGCc---------UUUUUAUaGGCUGGGUCC- -5'
30835 3' -50.5 NC_006552.1 + 63010 0.66 0.957272
Target:  5'- aGGuGUUGGAGAAAauggCCG-CCCAGc -3'
miRNA:   3'- gCC-CAGCCUUUUUaua-GGCuGGGUCc -5'
30835 3' -50.5 NC_006552.1 + 59632 0.67 0.938922
Target:  5'- uCGGGcCGGGAGGug--CUGGCUgGGGa -3'
miRNA:   3'- -GCCCaGCCUUUUuauaGGCUGGgUCC- -5'
30835 3' -50.5 NC_006552.1 + 60911 0.67 0.932013
Target:  5'- uCGGG-CGGAcgAGGAUAUCCgcgaucuuauggagGAgCCGGGc -3'
miRNA:   3'- -GCCCaGCCU--UUUUAUAGG--------------CUgGGUCC- -5'
30835 3' -50.5 NC_006552.1 + 45503 0.67 0.928098
Target:  5'- --uGUCGGAGAuuuuUCCGACCCugaacGGa -3'
miRNA:   3'- gccCAGCCUUUuuauAGGCUGGGu----CC- -5'
30835 3' -50.5 NC_006552.1 + 42371 0.68 0.915531
Target:  5'- uGGGUcaugaccCGGAAu--UGUCCGGgCCAGa -3'
miRNA:   3'- gCCCA-------GCCUUuuuAUAGGCUgGGUCc -5'
30835 3' -50.5 NC_006552.1 + 16590 0.69 0.872981
Target:  5'- uGGGUUGGcaccaccagcgagGAGGGUAUCCGcaucaccgauACCCAGu -3'
miRNA:   3'- gCCCAGCC-------------UUUUUAUAGGC----------UGGGUCc -5'
30835 3' -50.5 NC_006552.1 + 45568 0.7 0.849097
Target:  5'- -uGGUCGGAGAuuuuUCCGACCUg-- -3'
miRNA:   3'- gcCCAGCCUUUuuauAGGCUGGGucc -5'
30835 3' -50.5 NC_006552.1 + 45614 0.7 0.840403
Target:  5'- ---cUCGGAAGAAUuUCCGACCUcGGa -3'
miRNA:   3'- gcccAGCCUUUUUAuAGGCUGGGuCC- -5'
30835 3' -50.5 NC_006552.1 + 48694 0.7 0.813031
Target:  5'- cCGGGUUGGcgcc--GUCCGGCCCGc- -3'
miRNA:   3'- -GCCCAGCCuuuuuaUAGGCUGGGUcc -5'
30835 3' -50.5 NC_006552.1 + 45651 0.78 0.404914
Target:  5'- uGGGUCGGAuauuuuUCCGACCCGu- -3'
miRNA:   3'- gCCCAGCCUuuuuauAGGCUGGGUcc -5'
30835 3' -50.5 NC_006552.1 + 29712 0.82 0.254095
Target:  5'- gCGGGUcCGGAAGGAuUGUCCGcacuACCCGGGc -3'
miRNA:   3'- -GCCCA-GCCUUUUU-AUAGGC----UGGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.