miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30837 5' -56.5 NC_006552.1 + 30815 0.66 0.749747
Target:  5'- --uUCGCCUGguGCCACUGGGcauaGCGCu-- -3'
miRNA:   3'- guuAGCGGGC--UGGUGGCCU----UGCGucc -5'
30837 5' -56.5 NC_006552.1 + 3579 0.66 0.749747
Target:  5'- ---cUGgCCGAgCCGCCGGcGCcgGCAGGa -3'
miRNA:   3'- guuaGCgGGCU-GGUGGCCuUG--CGUCC- -5'
30837 5' -56.5 NC_006552.1 + 52188 0.66 0.749747
Target:  5'- cCGAagGCCUGGCCACCGaGGACuuGCu-- -3'
miRNA:   3'- -GUUagCGGGCUGGUGGC-CUUG--CGucc -5'
30837 5' -56.5 NC_006552.1 + 58192 0.66 0.748742
Target:  5'- aGAagGCCCuGGCCgaagccacgcugcGCCGGGugGCuaAGGg -3'
miRNA:   3'- gUUagCGGG-CUGG-------------UGGCCUugCG--UCC- -5'
30837 5' -56.5 NC_006552.1 + 34164 0.66 0.73964
Target:  5'- ----aGCCUGGCCGCCcagcaGCAGGg -3'
miRNA:   3'- guuagCGGGCUGGUGGccuugCGUCC- -5'
30837 5' -56.5 NC_006552.1 + 11040 0.66 0.73964
Target:  5'- uGAUgGCaaccaggCGGCCGCCGGGcuucaGCAGGc -3'
miRNA:   3'- gUUAgCGg------GCUGGUGGCCUug---CGUCC- -5'
30837 5' -56.5 NC_006552.1 + 26554 0.66 0.729432
Target:  5'- uCAggCGCUCGGCCugCGcGccauCGUAGGu -3'
miRNA:   3'- -GUuaGCGGGCUGGugGC-Cuu--GCGUCC- -5'
30837 5' -56.5 NC_006552.1 + 7195 0.66 0.70875
Target:  5'- cCAAgcgCGuCCCGuCC-CCGGcGCGCAGc -3'
miRNA:   3'- -GUUa--GC-GGGCuGGuGGCCuUGCGUCc -5'
30837 5' -56.5 NC_006552.1 + 22302 0.66 0.70875
Target:  5'- uGGUUGCCUGAuCCACCagcaGGuGCGCcGGu -3'
miRNA:   3'- gUUAGCGGGCU-GGUGG----CCuUGCGuCC- -5'
30837 5' -56.5 NC_006552.1 + 38377 0.66 0.698298
Target:  5'- --uUCGCCC-ACCAggguCCGGccGGCGCGGa -3'
miRNA:   3'- guuAGCGGGcUGGU----GGCC--UUGCGUCc -5'
30837 5' -56.5 NC_006552.1 + 60428 0.67 0.681454
Target:  5'- --cUCGCCCG-CgCACUGGAccaggcccgccaggcACGCAaGGa -3'
miRNA:   3'- guuAGCGGGCuG-GUGGCCU---------------UGCGU-CC- -5'
30837 5' -56.5 NC_006552.1 + 60163 0.67 0.677224
Target:  5'- aGAUCGCCgGccagcacuuCCGCCGGAuccGCcCAGGu -3'
miRNA:   3'- gUUAGCGGgCu--------GGUGGCCU---UGcGUCC- -5'
30837 5' -56.5 NC_006552.1 + 24768 0.67 0.677224
Target:  5'- cCAA-CGCCCuGcCCAUCGGucagcaccugGGCGCGGGu -3'
miRNA:   3'- -GUUaGCGGG-CuGGUGGCC----------UUGCGUCC- -5'
30837 5' -56.5 NC_006552.1 + 60370 0.67 0.666621
Target:  5'- cCAGUCGCuaGACCACaagCGGGccaacuCGCAGa -3'
miRNA:   3'- -GUUAGCGggCUGGUG---GCCUu-----GCGUCc -5'
30837 5' -56.5 NC_006552.1 + 59350 0.67 0.666621
Target:  5'- -cGUCaGCCCG-CCGCCG-AugGCAGc -3'
miRNA:   3'- guUAG-CGGGCuGGUGGCcUugCGUCc -5'
30837 5' -56.5 NC_006552.1 + 7565 0.67 0.666621
Target:  5'- --uUCGCCCugcGCCugCGGGAUGCc-- -3'
miRNA:   3'- guuAGCGGGc--UGGugGCCUUGCGucc -5'
30837 5' -56.5 NC_006552.1 + 1026 0.67 0.655988
Target:  5'- --cUCGUCaCGgcGCUGCCGGGcaucACGCAGGc -3'
miRNA:   3'- guuAGCGG-GC--UGGUGGCCU----UGCGUCC- -5'
30837 5' -56.5 NC_006552.1 + 48242 0.67 0.655988
Target:  5'- ---cCGCCCcgguUCGCCGGGACuGCAGa -3'
miRNA:   3'- guuaGCGGGcu--GGUGGCCUUG-CGUCc -5'
30837 5' -56.5 NC_006552.1 + 29240 0.67 0.645335
Target:  5'- gCGGUCGCCaguaGGCCGCCaGGcuucagauaGCGGGu -3'
miRNA:   3'- -GUUAGCGGg---CUGGUGG-CCuug------CGUCC- -5'
30837 5' -56.5 NC_006552.1 + 54131 0.68 0.624003
Target:  5'- -cAUCGUCUGAgCGCCGGGcCGCccGGa -3'
miRNA:   3'- guUAGCGGGCUgGUGGCCUuGCGu-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.