miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30839 3' -60 NC_006552.1 + 31311 0.66 0.572673
Target:  5'- aGCGggcUGGagGACUCGG-UACCGGUGu -3'
miRNA:   3'- gCGU---ACCagCUGGGCCuGUGGCCGCu -5'
30839 3' -60 NC_006552.1 + 2070 0.66 0.572673
Target:  5'- gCGuCGUGcG-CGGCCUGcugaucgaacucGACGCCGGCGGc -3'
miRNA:   3'- -GC-GUAC-CaGCUGGGC------------CUGUGGCCGCU- -5'
30839 3' -60 NC_006552.1 + 43006 0.66 0.552187
Target:  5'- gGCGaccuUGGUCuucACCCGGGCAUCGuCGGu -3'
miRNA:   3'- gCGU----ACCAGc--UGGGCCUGUGGCcGCU- -5'
30839 3' -60 NC_006552.1 + 33375 0.66 0.531927
Target:  5'- aGCAcgGGcCGGCCCuucguaGGGCGgCGGCGc -3'
miRNA:   3'- gCGUa-CCaGCUGGG------CCUGUgGCCGCu -5'
30839 3' -60 NC_006552.1 + 3577 0.67 0.511942
Target:  5'- uGC-UGGcCGAgCCGccGGCGCCGGCa- -3'
miRNA:   3'- gCGuACCaGCUgGGC--CUGUGGCCGcu -5'
30839 3' -60 NC_006552.1 + 28367 0.67 0.492274
Target:  5'- gCGCGUGuacagcUUGACCuCGGGCAacuugauauCCGGCGGc -3'
miRNA:   3'- -GCGUACc-----AGCUGG-GCCUGU---------GGCCGCU- -5'
30839 3' -60 NC_006552.1 + 34742 0.67 0.463449
Target:  5'- uGUAgUGGUU-ACCaCGGGCGCCGGCc- -3'
miRNA:   3'- gCGU-ACCAGcUGG-GCCUGUGGCCGcu -5'
30839 3' -60 NC_006552.1 + 2968 0.69 0.399873
Target:  5'- cCGCccGaGUUGGCCCGGgaguggauuAC-CCGGCGAc -3'
miRNA:   3'- -GCGuaC-CAGCUGGGCC---------UGuGGCCGCU- -5'
30839 3' -60 NC_006552.1 + 37818 0.69 0.374383
Target:  5'- gGCAUcugcgCGAUCUGGGCGCCGGCc- -3'
miRNA:   3'- gCGUAcca--GCUGGGCCUGUGGCCGcu -5'
30839 3' -60 NC_006552.1 + 33234 0.7 0.342148
Target:  5'- uGCAU-GUCu-UCCGGGCACuCGGCGAa -3'
miRNA:   3'- gCGUAcCAGcuGGGCCUGUG-GCCGCU- -5'
30839 3' -60 NC_006552.1 + 22027 0.73 0.206275
Target:  5'- gGCGUccUCGACCaGGACACUGGCGGc -3'
miRNA:   3'- gCGUAccAGCUGGgCCUGUGGCCGCU- -5'
30839 3' -60 NC_006552.1 + 2929 0.76 0.140195
Target:  5'- gGCAUGGUCGAUauucacgaCCGGAgACCGGUu- -3'
miRNA:   3'- gCGUACCAGCUG--------GGCCUgUGGCCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.