miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30840 5' -51.8 NC_006552.1 + 31674 0.66 0.902936
Target:  5'- aACGGugccuUCGUCGGCcgagAUCUGCAGgcGCg -3'
miRNA:   3'- aUGCUu----AGCGGCCG----UAGACGUUgaUG- -5'
30840 5' -51.8 NC_006552.1 + 12320 0.66 0.902936
Target:  5'- gUGCGuAGUCGCuCGGCGgc-GCccuGACUGCg -3'
miRNA:   3'- -AUGC-UUAGCG-GCCGUagaCG---UUGAUG- -5'
30840 5' -51.8 NC_006552.1 + 29796 0.66 0.898704
Target:  5'- cAgGAAgguUCGCCGGCGggccgCcacccagcgugacguUGCGACUGCu -3'
miRNA:   3'- aUgCUU---AGCGGCCGUa----G---------------ACGUUGAUG- -5'
30840 5' -51.8 NC_006552.1 + 8356 0.66 0.888433
Target:  5'- gACGAugccUGCCuugaGCAUCUGCGACUcguaGCg -3'
miRNA:   3'- aUGCUua--GCGGc---CGUAGACGUUGA----UG- -5'
30840 5' -51.8 NC_006552.1 + 35444 0.66 0.880764
Target:  5'- cGCGucuugCGCguuCGGCugcugCUGCGACUGCu -3'
miRNA:   3'- aUGCuua--GCG---GCCGua---GACGUUGAUG- -5'
30840 5' -51.8 NC_006552.1 + 36184 0.66 0.872825
Target:  5'- --aGcAUCGCCGGCAcCcGCGucgGCUGCg -3'
miRNA:   3'- augCuUAGCGGCCGUaGaCGU---UGAUG- -5'
30840 5' -51.8 NC_006552.1 + 11758 0.66 0.864621
Target:  5'- gGCGAAUggcaCGCuCGGCAUCcucGCGGCUc- -3'
miRNA:   3'- aUGCUUA----GCG-GCCGUAGa--CGUUGAug -5'
30840 5' -51.8 NC_006552.1 + 13202 0.66 0.86295
Target:  5'- gGCGGAacUCGUCGGCGgucgccuccccaCUGCGcgcgcGCUGCa -3'
miRNA:   3'- aUGCUU--AGCGGCCGUa-----------GACGU-----UGAUG- -5'
30840 5' -51.8 NC_006552.1 + 29549 0.67 0.847454
Target:  5'- gUACGGAUCGCCGGUggCgGUAccauggaaucGCUGa -3'
miRNA:   3'- -AUGCUUAGCGGCCGuaGaCGU----------UGAUg -5'
30840 5' -51.8 NC_006552.1 + 26298 0.67 0.847454
Target:  5'- aGCGGguaGUCGCCGGCcaaCaGCAGCUcGCc -3'
miRNA:   3'- aUGCU---UAGCGGCCGua-GaCGUUGA-UG- -5'
30840 5' -51.8 NC_006552.1 + 45360 0.67 0.847454
Target:  5'- gGCauGUCgGCCGGUAUCUGgCAGCgcgGCc -3'
miRNA:   3'- aUGcuUAG-CGGCCGUAGAC-GUUGa--UG- -5'
30840 5' -51.8 NC_006552.1 + 9348 0.67 0.838507
Target:  5'- gGCG--UCGCUGaGCGUCUGCGuacgGCUGa -3'
miRNA:   3'- aUGCuuAGCGGC-CGUAGACGU----UGAUg -5'
30840 5' -51.8 NC_006552.1 + 24247 0.67 0.833028
Target:  5'- gGCGGaacgcaucgguugugGUCGCCGGCAcuaccgGCAGCgGCa -3'
miRNA:   3'- aUGCU---------------UAGCGGCCGUaga---CGUUGaUG- -5'
30840 5' -51.8 NC_006552.1 + 44013 0.68 0.800527
Target:  5'- gGCGAAccUCGCCGGUGUCcggGuCGACcaUGCg -3'
miRNA:   3'- aUGCUU--AGCGGCCGUAGa--C-GUUG--AUG- -5'
30840 5' -51.8 NC_006552.1 + 10830 0.69 0.748954
Target:  5'- gGCGGuuguUCGCCGGg--CUGCGgcGCUGCc -3'
miRNA:   3'- aUGCUu---AGCGGCCguaGACGU--UGAUG- -5'
30840 5' -51.8 NC_006552.1 + 59057 0.69 0.738213
Target:  5'- cACGAG--GCUGGCGcUCUGCGcgucGCUGCg -3'
miRNA:   3'- aUGCUUagCGGCCGU-AGACGU----UGAUG- -5'
30840 5' -51.8 NC_006552.1 + 62439 0.69 0.72736
Target:  5'- gACGugccCGCCGGCGUUccgGCGccGCUGCg -3'
miRNA:   3'- aUGCuua-GCGGCCGUAGa--CGU--UGAUG- -5'
30840 5' -51.8 NC_006552.1 + 27220 0.7 0.709789
Target:  5'- cUugGAAUgGUCGGCAUCgGCGguccaacaugcagcgACUGCc -3'
miRNA:   3'- -AugCUUAgCGGCCGUAGaCGU---------------UGAUG- -5'
30840 5' -51.8 NC_006552.1 + 40152 0.7 0.705362
Target:  5'- gGCGAAcugcUCGCCaGGCAUCaggucuUGCAGCa-- -3'
miRNA:   3'- aUGCUU----AGCGG-CCGUAG------ACGUUGaug -5'
30840 5' -51.8 NC_006552.1 + 61387 0.7 0.705362
Target:  5'- -uUGGcgCGCCGGCg---GCGGCUACa -3'
miRNA:   3'- auGCUuaGCGGCCGuagaCGUUGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.