miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30841 3' -52.1 NC_006552.1 + 12247 0.66 0.916575
Target:  5'- aCGGCGcUCGGUguucugcuUCCGcucgcgauucAGCGCUUcaucGGCCc -3'
miRNA:   3'- gGUCGU-AGCUA--------AGGU----------UCGCGAA----CCGG- -5'
30841 3' -52.1 NC_006552.1 + 4611 0.66 0.912126
Target:  5'- aCGGgGUCGGUUcuuggggaaucaaCCGGGCGCgacacgaauuguaGGCCg -3'
miRNA:   3'- gGUCgUAGCUAA-------------GGUUCGCGaa-----------CCGG- -5'
30841 3' -52.1 NC_006552.1 + 35984 0.66 0.910177
Target:  5'- aCCAGCuucUCGuagCCGAugguGUGCUugccguccuUGGCCa -3'
miRNA:   3'- -GGUCGu--AGCuaaGGUU----CGCGA---------ACCGG- -5'
30841 3' -52.1 NC_006552.1 + 12126 0.66 0.910177
Target:  5'- gCC-GCA-CGGUgUCCAGGaaCUUGGCCu -3'
miRNA:   3'- -GGuCGUaGCUA-AGGUUCgcGAACCGG- -5'
30841 3' -52.1 NC_006552.1 + 60343 0.66 0.910177
Target:  5'- gCCGGaCAUUGAguggCC-GGCGaagGGCCa -3'
miRNA:   3'- -GGUC-GUAGCUaa--GGuUCGCgaaCCGG- -5'
30841 3' -52.1 NC_006552.1 + 62320 0.66 0.903501
Target:  5'- aCGGCAaguucgUCGAcuuccccgagUUCCAcuuGCGCUacUGGCUc -3'
miRNA:   3'- gGUCGU------AGCU----------AAGGUu--CGCGA--ACCGG- -5'
30841 3' -52.1 NC_006552.1 + 57300 0.66 0.903501
Target:  5'- uCUGGCucaaCGAUgCCGcGCGCagUGGCCu -3'
miRNA:   3'- -GGUCGua--GCUAaGGUuCGCGa-ACCGG- -5'
30841 3' -52.1 NC_006552.1 + 18245 0.66 0.902818
Target:  5'- uCCAGUAUucgccgcCGAcUCC-AGCGCUccgguUGGCg -3'
miRNA:   3'- -GGUCGUA-------GCUaAGGuUCGCGA-----ACCGg -5'
30841 3' -52.1 NC_006552.1 + 24510 0.66 0.889328
Target:  5'- uCCGGaa--GAUccUCCAGGCGCUgacGCCc -3'
miRNA:   3'- -GGUCguagCUA--AGGUUCGCGAac-CGG- -5'
30841 3' -52.1 NC_006552.1 + 41136 0.66 0.889328
Target:  5'- uCCuGCG-CGAUgaugCCGcAGCGCU-GGUCg -3'
miRNA:   3'- -GGuCGUaGCUAa---GGU-UCGCGAaCCGG- -5'
30841 3' -52.1 NC_006552.1 + 62070 0.66 0.889328
Target:  5'- gCCGGguUCGAcaUCCugguGGUGCaugaggaUGGCCg -3'
miRNA:   3'- -GGUCguAGCUa-AGGu---UCGCGa------ACCGG- -5'
30841 3' -52.1 NC_006552.1 + 37751 0.66 0.881838
Target:  5'- aCCAGCA--GggUUCGGGCGCU-GGUa -3'
miRNA:   3'- -GGUCGUagCuaAGGUUCGCGAaCCGg -5'
30841 3' -52.1 NC_006552.1 + 32201 0.66 0.881838
Target:  5'- aCCGGCAUgG---UCGGGCGCgacauaucGGCCg -3'
miRNA:   3'- -GGUCGUAgCuaaGGUUCGCGaa------CCGG- -5'
30841 3' -52.1 NC_006552.1 + 19181 0.66 0.881838
Target:  5'- aCCGGCGcccCGAgccccCCAAGUGCUUccucGCCg -3'
miRNA:   3'- -GGUCGUa--GCUaa---GGUUCGCGAAc---CGG- -5'
30841 3' -52.1 NC_006552.1 + 61706 0.66 0.880309
Target:  5'- gCCGGCAUCcucaCCGcGCGCggguacgcgcccUGGCCg -3'
miRNA:   3'- -GGUCGUAGcuaaGGUuCGCGa-----------ACCGG- -5'
30841 3' -52.1 NC_006552.1 + 43232 0.67 0.874088
Target:  5'- uUCAGC--CGg--CCAAGCGCUUGGa- -3'
miRNA:   3'- -GGUCGuaGCuaaGGUUCGCGAACCgg -5'
30841 3' -52.1 NC_006552.1 + 18905 0.67 0.866082
Target:  5'- cUCGGCAUCGAUguu-GGC-CUgGGCCu -3'
miRNA:   3'- -GGUCGUAGCUAagguUCGcGAaCCGG- -5'
30841 3' -52.1 NC_006552.1 + 63172 0.67 0.863631
Target:  5'- aCCuGCcgaCGAUguUCgGAGCGCUgcaaggcguuguccUGGCCg -3'
miRNA:   3'- -GGuCGua-GCUA--AGgUUCGCGA--------------ACCGG- -5'
30841 3' -52.1 NC_006552.1 + 29049 0.67 0.857828
Target:  5'- cCCAGCcuggCGGcUCCAagaAGCGCgu-GCCg -3'
miRNA:   3'- -GGUCGua--GCUaAGGU---UCGCGaacCGG- -5'
30841 3' -52.1 NC_006552.1 + 62990 0.67 0.849334
Target:  5'- gCCGGCGgaccugCGccgCCAGGUGUUggagaaaaUGGCCg -3'
miRNA:   3'- -GGUCGUa-----GCuaaGGUUCGCGA--------ACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.