miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30841 5' -53.5 NC_006552.1 + 33833 0.66 0.855691
Target:  5'- aCGGCguGAaaccgccGAACuGGccGCCGAGCGGg -3'
miRNA:   3'- gGCCGguCUa------CUUGuUC--UGGCUCGUC- -5'
30841 5' -53.5 NC_006552.1 + 33215 0.66 0.855691
Target:  5'- gCCGGCCAgGAUGccgcgcuGCAuGucuuCCGGGCAc -3'
miRNA:   3'- -GGCCGGU-CUACu------UGUuCu---GGCUCGUc -5'
30841 5' -53.5 NC_006552.1 + 53595 0.66 0.855691
Target:  5'- gCCGGCCAGuucgGuGCcgccGGCUGAGguGg -3'
miRNA:   3'- -GGCCGGUCua--CuUGuu--CUGGCUCguC- -5'
30841 5' -53.5 NC_006552.1 + 53668 0.66 0.835926
Target:  5'- gUCGGCCAucUGGgccaggauccagacGCAAGAucuaccCCGGGCGGa -3'
miRNA:   3'- -GGCCGGUcuACU--------------UGUUCU------GGCUCGUC- -5'
30841 5' -53.5 NC_006552.1 + 12191 0.66 0.829682
Target:  5'- gCGGCCAGugccuUGuc--GGACCGcGCAGa -3'
miRNA:   3'- gGCCGGUCu----ACuuguUCUGGCuCGUC- -5'
30841 5' -53.5 NC_006552.1 + 45273 0.66 0.829682
Target:  5'- aCCGGCCAagcGGUGuauCGAGugCGAuaGGc -3'
miRNA:   3'- -GGCCGGU---CUACuu-GUUCugGCUcgUC- -5'
30841 5' -53.5 NC_006552.1 + 45008 0.67 0.824249
Target:  5'- cUCGGCCAGGgccugcucagcggcGGACAAGuuCGAuGCGGu -3'
miRNA:   3'- -GGCCGGUCUa-------------CUUGUUCugGCU-CGUC- -5'
30841 5' -53.5 NC_006552.1 + 58872 0.67 0.820587
Target:  5'- uUCGGCCGGAgaUGGACGAu-CCGAugaGCAc -3'
miRNA:   3'- -GGCCGGUCU--ACUUGUUcuGGCU---CGUc -5'
30841 5' -53.5 NC_006552.1 + 61488 0.67 0.801817
Target:  5'- cCUGGCCGGucgacuacGUGcGCGcccGGGCCGAGUAc -3'
miRNA:   3'- -GGCCGGUC--------UACuUGU---UCUGGCUCGUc -5'
30841 5' -53.5 NC_006552.1 + 20777 0.67 0.801817
Target:  5'- uCCaGCCAGuUGAugAAGACguUGGGCAc -3'
miRNA:   3'- -GGcCGGUCuACUugUUCUG--GCUCGUc -5'
30841 5' -53.5 NC_006552.1 + 32224 0.67 0.792161
Target:  5'- aUCGGCCGGGUaGAAaccCAGGugCGA-CAGu -3'
miRNA:   3'- -GGCCGGUCUA-CUU---GUUCugGCUcGUC- -5'
30841 5' -53.5 NC_006552.1 + 16709 0.67 0.781349
Target:  5'- aCUGcGCCGGAgUGAGCAAG-CCGucaucaguuucuuGGCGGa -3'
miRNA:   3'- -GGC-CGGUCU-ACUUGUUCuGGC-------------UCGUC- -5'
30841 5' -53.5 NC_006552.1 + 21397 0.68 0.772364
Target:  5'- gCCGGCCGGucaggcgaagcGUGAACGugaAGugccuGCCGcGCAGg -3'
miRNA:   3'- -GGCCGGUC-----------UACUUGU---UC-----UGGCuCGUC- -5'
30841 5' -53.5 NC_006552.1 + 64239 0.69 0.707737
Target:  5'- gCGGCCAGAccugGAGCuucauugaggacGGACC-AGCAGa -3'
miRNA:   3'- gGCCGGUCUa---CUUGu-----------UCUGGcUCGUC- -5'
30841 5' -53.5 NC_006552.1 + 32703 0.69 0.699135
Target:  5'- gCCGGCCGGc---GCGGGGCCG-GUGGa -3'
miRNA:   3'- -GGCCGGUCuacuUGUUCUGGCuCGUC- -5'
30841 5' -53.5 NC_006552.1 + 51692 0.69 0.688325
Target:  5'- gCCGGcCCAGGUacgcGGCAAGACC-AGCGa -3'
miRNA:   3'- -GGCC-GGUCUAc---UUGUUCUGGcUCGUc -5'
30841 5' -53.5 NC_006552.1 + 58392 0.7 0.611746
Target:  5'- aCCGGCUAcGGUGAGCGcGAa-GGGCAGc -3'
miRNA:   3'- -GGCCGGU-CUACUUGUuCUggCUCGUC- -5'
30841 5' -53.5 NC_006552.1 + 53770 0.72 0.535967
Target:  5'- aCCGGCCAGc--AGCAGGAgcgcaCCGAGUGGc -3'
miRNA:   3'- -GGCCGGUCuacUUGUUCU-----GGCUCGUC- -5'
30841 5' -53.5 NC_006552.1 + 58629 0.74 0.406069
Target:  5'- gCCGGgCAGAcUGAACcgcGACCGGGCGa -3'
miRNA:   3'- -GGCCgGUCU-ACUUGuu-CUGGCUCGUc -5'
30841 5' -53.5 NC_006552.1 + 34761 0.78 0.236835
Target:  5'- gCCGGCCAGGUGAACcagcauGGACUGguccaGGUAGg -3'
miRNA:   3'- -GGCCGGUCUACUUGu-----UCUGGC-----UCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.