miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30843 3' -54.5 NC_006552.1 + 11286 0.66 0.808106
Target:  5'- cCCAuGCCGGcGGAAGGCUCC---AGCa -3'
miRNA:   3'- uGGUuUGGCU-UCUUCCGGGGccaUCG- -5'
30843 3' -54.5 NC_006552.1 + 5908 0.66 0.808106
Target:  5'- uCCAAagGCCGggGcaucacGCCCCGGcuucuugGGCa -3'
miRNA:   3'- uGGUU--UGGCuuCuuc---CGGGGCCa------UCG- -5'
30843 3' -54.5 NC_006552.1 + 32580 0.66 0.805271
Target:  5'- cGCCAGGCUgguGAAGucGGCgaaguuguccaccuCCCGGU-GCa -3'
miRNA:   3'- -UGGUUUGG---CUUCuuCCG--------------GGGCCAuCG- -5'
30843 3' -54.5 NC_006552.1 + 52180 0.66 0.798594
Target:  5'- cGCCAucGCCGAAGGccuGGCCaCCGaGgacuuGCu -3'
miRNA:   3'- -UGGUu-UGGCUUCUu--CCGG-GGC-Cau---CG- -5'
30843 3' -54.5 NC_006552.1 + 53497 0.66 0.798594
Target:  5'- cACUucACCGggG-AGGaCCUGGUGGa -3'
miRNA:   3'- -UGGuuUGGCuuCuUCCgGGGCCAUCg -5'
30843 3' -54.5 NC_006552.1 + 65099 0.66 0.78891
Target:  5'- cGCCGGcaaaCGAAGcGGGaGCCCCGG-AGUg -3'
miRNA:   3'- -UGGUUug--GCUUC-UUC-CGGGGCCaUCG- -5'
30843 3' -54.5 NC_006552.1 + 56724 0.66 0.779064
Target:  5'- gACCGuGgCGAGGAacugcgccAGGCCCUGGc-GCu -3'
miRNA:   3'- -UGGUuUgGCUUCU--------UCCGGGGCCauCG- -5'
30843 3' -54.5 NC_006552.1 + 26236 0.66 0.769068
Target:  5'- gGCgAAACUGcgccGGucGGCCcagcuCCGGUAGCg -3'
miRNA:   3'- -UGgUUUGGCu---UCuuCCGG-----GGCCAUCG- -5'
30843 3' -54.5 NC_006552.1 + 63339 0.66 0.769068
Target:  5'- uGCCAcGCCGAccuAGAcgaccaGGGCaaCCCGGUccGCa -3'
miRNA:   3'- -UGGUuUGGCU---UCU------UCCG--GGGCCAu-CG- -5'
30843 3' -54.5 NC_006552.1 + 42298 0.67 0.758933
Target:  5'- cGCCAGGCgUGcAGAAa-CUCCGGUAGCg -3'
miRNA:   3'- -UGGUUUG-GCuUCUUccGGGGCCAUCG- -5'
30843 3' -54.5 NC_006552.1 + 62123 0.67 0.748669
Target:  5'- gGCCAAGCUGcaguuGAAcGCCaaGGUGGCc -3'
miRNA:   3'- -UGGUUUGGCuu---CUUcCGGggCCAUCG- -5'
30843 3' -54.5 NC_006552.1 + 44372 0.67 0.727802
Target:  5'- uGCCAgcAGCCGGucGGAGGGUCCa-GUcAGCa -3'
miRNA:   3'- -UGGU--UUGGCU--UCUUCCGGGgcCA-UCG- -5'
30843 3' -54.5 NC_006552.1 + 53994 0.68 0.706557
Target:  5'- gGCCAGGCgCGuGGcccuGGCCCUGGccGCg -3'
miRNA:   3'- -UGGUUUG-GCuUCuu--CCGGGGCCauCG- -5'
30843 3' -54.5 NC_006552.1 + 32098 0.68 0.685025
Target:  5'- cACCAGGCgcagCGAAGugucGCCCUGGaUGGCg -3'
miRNA:   3'- -UGGUUUG----GCUUCuuc-CGGGGCC-AUCG- -5'
30843 3' -54.5 NC_006552.1 + 29282 0.69 0.619562
Target:  5'- aGCCAAACCGuGGGAuucGcGCCCCacGGcGGCg -3'
miRNA:   3'- -UGGUUUGGCuUCUU---C-CGGGG--CCaUCG- -5'
30843 3' -54.5 NC_006552.1 + 5587 0.7 0.55446
Target:  5'- uCCAAgcGCCGAAGccGGCCaggcugaCGGUcAGCg -3'
miRNA:   3'- uGGUU--UGGCUUCuuCCGGg------GCCA-UCG- -5'
30843 3' -54.5 NC_006552.1 + 4513 0.71 0.522623
Target:  5'- uGCCAGccAUCGgcGAuGGCCUCGGUcaugaAGCg -3'
miRNA:   3'- -UGGUU--UGGCuuCUuCCGGGGCCA-----UCG- -5'
30843 3' -54.5 NC_006552.1 + 50314 0.71 0.511124
Target:  5'- cACCGAaguugcgucggcaAUCGgcGugcuGGCCCUGGUGGCu -3'
miRNA:   3'- -UGGUU-------------UGGCuuCuu--CCGGGGCCAUCG- -5'
30843 3' -54.5 NC_006552.1 + 58167 0.73 0.419762
Target:  5'- cCCAGcaagaguaucuucgGCCGcAAGAAGGCCCUGGccgaAGCc -3'
miRNA:   3'- uGGUU--------------UGGC-UUCUUCCGGGGCCa---UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.