miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30843 5' -54.9 NC_006552.1 + 2061 0.66 0.78891
Target:  5'- aGCGC-GCCGGcg--UCgUGCGCgGCCUGc -3'
miRNA:   3'- -CGCGaUGGCCucaaAG-ACGUG-CGGAC- -5'
30843 5' -54.9 NC_006552.1 + 12848 0.66 0.78891
Target:  5'- uGCGCUGCCcggcgggccuGGAuUUcCUGCuGCGCCUc -3'
miRNA:   3'- -CGCGAUGG----------CCUcAAaGACG-UGCGGAc -5'
30843 5' -54.9 NC_006552.1 + 14878 0.66 0.779064
Target:  5'- gGUGCUGCCGGA---UCgGCAcCGCUUc -3'
miRNA:   3'- -CGCGAUGGCCUcaaAGaCGU-GCGGAc -5'
30843 5' -54.9 NC_006552.1 + 59972 0.66 0.769068
Target:  5'- cGCcCUAgCGGAuGUUcaccgcgaUCUGCGCGCCc- -3'
miRNA:   3'- -CGcGAUgGCCU-CAA--------AGACGUGCGGac -5'
30843 5' -54.9 NC_006552.1 + 822 0.67 0.695822
Target:  5'- uCGCcaggGCCGGGuauaggucauuGUccaguacUCUGCGCGCCUGg -3'
miRNA:   3'- cGCGa---UGGCCU-----------CAa------AGACGUGCGGAC- -5'
30843 5' -54.9 NC_006552.1 + 15362 0.68 0.674178
Target:  5'- -gGCUGCUcGAGcUUCUGuUugGCCUGg -3'
miRNA:   3'- cgCGAUGGcCUCaAAGAC-GugCGGAC- -5'
30843 5' -54.9 NC_006552.1 + 62759 0.68 0.652377
Target:  5'- gGCGCUGCCGcgc---CUGCgagcgACGCCUGg -3'
miRNA:   3'- -CGCGAUGGCcucaaaGACG-----UGCGGAC- -5'
30843 5' -54.9 NC_006552.1 + 15526 0.68 0.630502
Target:  5'- gGC-CUGCUGGAuGUcgucCUGCACGCCg- -3'
miRNA:   3'- -CGcGAUGGCCU-CAaa--GACGUGCGGac -5'
30843 5' -54.9 NC_006552.1 + 40554 0.69 0.576
Target:  5'- -gGC-GCCGGAGaagUCcGCGCGCUUGg -3'
miRNA:   3'- cgCGaUGGCCUCaa-AGaCGUGCGGAC- -5'
30843 5' -54.9 NC_006552.1 + 39284 0.69 0.565203
Target:  5'- aGCGCUGCCGGcgcAGgaagCgGCAgGCCUc -3'
miRNA:   3'- -CGCGAUGGCC---UCaaa-GaCGUgCGGAc -5'
30843 5' -54.9 NC_006552.1 + 14283 0.7 0.55446
Target:  5'- aCGUUGCCGGGGgugaaguaUUCgGCGCggGCCUGg -3'
miRNA:   3'- cGCGAUGGCCUCa-------AAGaCGUG--CGGAC- -5'
30843 5' -54.9 NC_006552.1 + 19507 0.71 0.495616
Target:  5'- cGCGCUGCCGGAGccaCUgauacuagccgacacGUGCGCCg- -3'
miRNA:   3'- -CGCGAUGGCCUCaaaGA---------------CGUGCGGac -5'
30843 5' -54.9 NC_006552.1 + 20192 0.71 0.451439
Target:  5'- cGCGCUGCUGGuugaUCUGCcccaGCGCCa- -3'
miRNA:   3'- -CGCGAUGGCCucaaAGACG----UGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.