miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30844 3' -53.6 NC_006552.1 + 32580 0.66 0.843254
Target:  5'- cGCCaggCugGugAAGuCGGCGaagUUGUCCAc -3'
miRNA:   3'- -UGGa--GugUugUUC-GCCGCa--AGCAGGU- -5'
30844 3' -53.6 NC_006552.1 + 42052 0.66 0.825377
Target:  5'- gGCUUCACGcaauACAcggucGGCGGUGaucugCGUCCGc -3'
miRNA:   3'- -UGGAGUGU----UGU-----UCGCCGCaa---GCAGGU- -5'
30844 3' -53.6 NC_006552.1 + 61218 0.66 0.816127
Target:  5'- gGCgaCACAGCcaAGGgGGCGUUCGgcuUCCu -3'
miRNA:   3'- -UGgaGUGUUG--UUCgCCGCAAGC---AGGu -5'
30844 3' -53.6 NC_006552.1 + 22006 0.66 0.806682
Target:  5'- cGCCugaUCGCuGACGguGGCGGCGUccUCGaCCAg -3'
miRNA:   3'- -UGG---AGUG-UUGU--UCGCCGCA--AGCaGGU- -5'
30844 3' -53.6 NC_006552.1 + 20815 0.66 0.806682
Target:  5'- -gCUCGCGuCcGGCGGCGUggCGUCgAa -3'
miRNA:   3'- ugGAGUGUuGuUCGCCGCAa-GCAGgU- -5'
30844 3' -53.6 NC_006552.1 + 5386 0.66 0.806682
Target:  5'- cGCCggGCAGCGAgucGCGGaacugcuGUUCGUCCu -3'
miRNA:   3'- -UGGagUGUUGUU---CGCCg------CAAGCAGGu -5'
30844 3' -53.6 NC_006552.1 + 31096 0.67 0.78725
Target:  5'- cCCUCACAaucACAGG-GGCGUUCaagcggCCGg -3'
miRNA:   3'- uGGAGUGU---UGUUCgCCGCAAGca----GGU- -5'
30844 3' -53.6 NC_006552.1 + 26515 0.68 0.746526
Target:  5'- cGCCUgcCAcCAGCAgcGGCGGCGccggggUGUCCAg -3'
miRNA:   3'- -UGGA--GU-GUUGU--UCGCCGCaa----GCAGGU- -5'
30844 3' -53.6 NC_006552.1 + 64739 0.68 0.714717
Target:  5'- gGCggCGCuGCAGGUGGCGcucaacaUCGUCCAa -3'
miRNA:   3'- -UGgaGUGuUGUUCGCCGCa------AGCAGGU- -5'
30844 3' -53.6 NC_006552.1 + 12880 0.7 0.594033
Target:  5'- cGCCUCgGCGACcucGGCGGCGUgcgccuugaugUCGUCg- -3'
miRNA:   3'- -UGGAG-UGUUGu--UCGCCGCA-----------AGCAGgu -5'
30844 3' -53.6 NC_006552.1 + 29925 0.72 0.507861
Target:  5'- gGCgaUCACAGCAuugucAGCGGCGaguucucaUCGUCCAg -3'
miRNA:   3'- -UGg-AGUGUUGU-----UCGCCGCa-------AGCAGGU- -5'
30844 3' -53.6 NC_006552.1 + 11197 0.8 0.158775
Target:  5'- gGCCUCcaGCAACucGCGGCGUUCG-CCGg -3'
miRNA:   3'- -UGGAG--UGUUGuuCGCCGCAAGCaGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.