miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30847 5' -57.7 NC_006552.1 + 64428 0.66 0.640913
Target:  5'- cGGCauCAUCGCCGcccUCGGCCUGG-CCGu -3'
miRNA:   3'- cUCGc-GUAGUGGU---AGCUGGGCCuGGU- -5'
30847 5' -57.7 NC_006552.1 + 24719 0.66 0.640913
Target:  5'- cGGGuCGUAggcCACCAgcCGGCgCCGGGCCu -3'
miRNA:   3'- -CUC-GCGUa--GUGGUa-GCUG-GGCCUGGu -5'
30847 5' -57.7 NC_006552.1 + 11638 0.66 0.640913
Target:  5'- -uGCGCuuGUCGCCGUCG-CCCuG-CCAg -3'
miRNA:   3'- cuCGCG--UAGUGGUAGCuGGGcCuGGU- -5'
30847 5' -57.7 NC_006552.1 + 35158 0.66 0.640913
Target:  5'- aGAGCGCGaacaaGCCggCGGCCUguuGGAUCAu -3'
miRNA:   3'- -CUCGCGUag---UGGuaGCUGGG---CCUGGU- -5'
30847 5' -57.7 NC_006552.1 + 1992 0.66 0.630186
Target:  5'- cAGCGCugggCugCAUCaGCCUGGAUCc -3'
miRNA:   3'- cUCGCGua--GugGUAGcUGGGCCUGGu -5'
30847 5' -57.7 NC_006552.1 + 18894 0.66 0.619461
Target:  5'- aGAGCcugcugcucgGCAUCGauGUUGGCCUGGGCCu -3'
miRNA:   3'- -CUCG----------CGUAGUggUAGCUGGGCCUGGu -5'
30847 5' -57.7 NC_006552.1 + 9816 0.66 0.598051
Target:  5'- cGGCGCgGUCACCGgguccagauUCGGCCCa-ACCAg -3'
miRNA:   3'- cUCGCG-UAGUGGU---------AGCUGGGccUGGU- -5'
30847 5' -57.7 NC_006552.1 + 53998 0.66 0.598051
Target:  5'- aGGCGCGUgGCCc-UGGCCCuGGCCGc -3'
miRNA:   3'- cUCGCGUAgUGGuaGCUGGGcCUGGU- -5'
30847 5' -57.7 NC_006552.1 + 42026 0.66 0.598051
Target:  5'- -cGUGCAUCuGCCGUC-ACCUGGuuCCAg -3'
miRNA:   3'- cuCGCGUAG-UGGUAGcUGGGCCu-GGU- -5'
30847 5' -57.7 NC_006552.1 + 31702 0.67 0.587384
Target:  5'- aGGCGCGcCACCu---GCCCGGACUu -3'
miRNA:   3'- cUCGCGUaGUGGuagcUGGGCCUGGu -5'
30847 5' -57.7 NC_006552.1 + 30836 0.67 0.587384
Target:  5'- uAGCGCuccagcagCACCAUgucucCGACCUGGGCg- -3'
miRNA:   3'- cUCGCGua------GUGGUA-----GCUGGGCCUGgu -5'
30847 5' -57.7 NC_006552.1 + 2556 0.67 0.545144
Target:  5'- aGAGCGCuacaacguugCGCCAUCGACggCCGuGACg- -3'
miRNA:   3'- -CUCGCGua--------GUGGUAGCUG--GGC-CUGgu -5'
30847 5' -57.7 NC_006552.1 + 8231 0.68 0.514117
Target:  5'- aAGCGCAgCA-UGUCGGCgCGGGCCAu -3'
miRNA:   3'- cUCGCGUaGUgGUAGCUGgGCCUGGU- -5'
30847 5' -57.7 NC_006552.1 + 43477 0.68 0.483834
Target:  5'- -uGCGCGaaCACCGUCGugUCGGuCCu -3'
miRNA:   3'- cuCGCGUa-GUGGUAGCugGGCCuGGu -5'
30847 5' -57.7 NC_006552.1 + 48390 0.69 0.44485
Target:  5'- cGGCGCAaCGCCGaaaCGcACCCGGACg- -3'
miRNA:   3'- cUCGCGUaGUGGUa--GC-UGGGCCUGgu -5'
30847 5' -57.7 NC_006552.1 + 61429 0.71 0.347552
Target:  5'- cGAGaCGU-UCACCcgCG-CCCGGGCCGu -3'
miRNA:   3'- -CUC-GCGuAGUGGuaGCuGGGCCUGGU- -5'
30847 5' -57.7 NC_006552.1 + 44733 0.71 0.347552
Target:  5'- aGGGCG-AUCGCCcaggccucguUCGGCUCGGGCCGa -3'
miRNA:   3'- -CUCGCgUAGUGGu---------AGCUGGGCCUGGU- -5'
30847 5' -57.7 NC_006552.1 + 14712 0.72 0.279963
Target:  5'- cGAGCGCucaggaaguUCACCAUCGcGCCgCGGugCu -3'
miRNA:   3'- -CUCGCGu--------AGUGGUAGC-UGG-GCCugGu -5'
30847 5' -57.7 NC_006552.1 + 61525 0.75 0.201341
Target:  5'- cGGCGUcgAUCACCAg-GACCUGGACCu -3'
miRNA:   3'- cUCGCG--UAGUGGUagCUGGGCCUGGu -5'
30847 5' -57.7 NC_006552.1 + 49749 0.75 0.181326
Target:  5'- -uGCGCcgAUCACCGUUcccacGCCCGGACCAg -3'
miRNA:   3'- cuCGCG--UAGUGGUAGc----UGGGCCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.