Results 1 - 16 of 16 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30851 | 5' | -51.7 | NC_006552.1 | + | 52219 | 0.77 | 0.422202 |
Target: 5'- cGUCGAccagcCGGCCCuGGACAACCUGGc -3' miRNA: 3'- cCAGCUcau--GCUGGG-CUUGUUGGACC- -5' |
|||||||
30851 | 5' | -51.7 | NC_006552.1 | + | 64466 | 0.66 | 0.926871 |
Target: 5'- uGGUgGAG-ACauuCCCGAucauccgcacgcugGCGGCCUGGc -3' miRNA: 3'- -CCAgCUCaUGcu-GGGCU--------------UGUUGGACC- -5' |
|||||||
30851 | 5' | -51.7 | NC_006552.1 | + | 51036 | 0.67 | 0.916841 |
Target: 5'- uGGcCGAugccgGCGAuCCCGAGaCAGCCcUGGa -3' miRNA: 3'- -CCaGCUca---UGCU-GGGCUU-GUUGG-ACC- -5' |
|||||||
30851 | 5' | -51.7 | NC_006552.1 | + | 38027 | 0.67 | 0.910577 |
Target: 5'- uGUUGAucaACGGCCCGGAUGGCCUc- -3' miRNA: 3'- cCAGCUca-UGCUGGGCUUGUUGGAcc -5' |
|||||||
30851 | 5' | -51.7 | NC_006552.1 | + | 59033 | 0.67 | 0.897246 |
Target: 5'- -aUCGAGUACaagcugucACCCGAACAcgaGgCUGGc -3' miRNA: 3'- ccAGCUCAUGc-------UGGGCUUGU---UgGACC- -5' |
|||||||
30851 | 5' | -51.7 | NC_006552.1 | + | 4904 | 0.68 | 0.890185 |
Target: 5'- uGGUCGGcaGCGGCCUuauuGAGCGcuGCCUGu -3' miRNA: 3'- -CCAGCUcaUGCUGGG----CUUGU--UGGACc -5' |
|||||||
30851 | 5' | -51.7 | NC_006552.1 | + | 50229 | 0.68 | 0.890185 |
Target: 5'- -aUCGAG-GCGGCCCGAagcGCAAUCg-- -3' miRNA: 3'- ccAGCUCaUGCUGGGCU---UGUUGGacc -5' |
|||||||
30851 | 5' | -51.7 | NC_006552.1 | + | 8270 | 0.68 | 0.885825 |
Target: 5'- cGGUCGGugGCGGCgCGGaacucgcgguacagcGCGACCUGa -3' miRNA: 3'- -CCAGCUcaUGCUGgGCU---------------UGUUGGACc -5' |
|||||||
30851 | 5' | -51.7 | NC_006552.1 | + | 44435 | 0.68 | 0.875297 |
Target: 5'- cGGcUCGAGUACGugCuguuCGAGCAGCaaCUGc -3' miRNA: 3'- -CC-AGCUCAUGCugG----GCUUGUUG--GACc -5' |
|||||||
30851 | 5' | -51.7 | NC_006552.1 | + | 41843 | 0.68 | 0.867481 |
Target: 5'- ---aGGGUGCGGCUCG-GCAuuggggucgaaGCCUGGg -3' miRNA: 3'- ccagCUCAUGCUGGGCuUGU-----------UGGACC- -5' |
|||||||
30851 | 5' | -51.7 | NC_006552.1 | + | 64664 | 0.68 | 0.859424 |
Target: 5'- cGGUCagcuucgcgacaGAGUAUGugCCGAGC-ACC-GGc -3' miRNA: 3'- -CCAG------------CUCAUGCugGGCUUGuUGGaCC- -5' |
|||||||
30851 | 5' | -51.7 | NC_006552.1 | + | 53168 | 0.68 | 0.859424 |
Target: 5'- aGG-CGAucGUGCGACCC-AACGGCUgGGa -3' miRNA: 3'- -CCaGCU--CAUGCUGGGcUUGUUGGaCC- -5' |
|||||||
30851 | 5' | -51.7 | NC_006552.1 | + | 7107 | 0.7 | 0.757352 |
Target: 5'- cGGUUGAucugcucUGCGGCgCCGAACAACUUGc -3' miRNA: 3'- -CCAGCUc------AUGCUG-GGCUUGUUGGACc -5' |
|||||||
30851 | 5' | -51.7 | NC_006552.1 | + | 35137 | 0.74 | 0.564227 |
Target: 5'- gGGUCGAGuUGCGGCCCuggcagagcgcGAACAagccggcgGCCUGu -3' miRNA: 3'- -CCAGCUC-AUGCUGGG-----------CUUGU--------UGGACc -5' |
|||||||
30851 | 5' | -51.7 | NC_006552.1 | + | 61515 | 0.75 | 0.50108 |
Target: 5'- gGGcCGAGUACGGCgUCGAucaccAgGACCUGGa -3' miRNA: 3'- -CCaGCUCAUGCUG-GGCU-----UgUUGGACC- -5' |
|||||||
30851 | 5' | -51.7 | NC_006552.1 | + | 49061 | 0.66 | 0.939193 |
Target: 5'- --aUGAu--CGACCCacgagcGAACAGCCUGGa -3' miRNA: 3'- ccaGCUcauGCUGGG------CUUGUUGGACC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home