miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30852 3' -56 NC_006552.1 + 33375 0.66 0.742259
Target:  5'- -aGCACGgGCCGGCcCUUCgUaggGCGg -3'
miRNA:   3'- caUGUGCgUGGCCGuGAAGgGga-UGC- -5'
30852 3' -56 NC_006552.1 + 27631 0.66 0.725663
Target:  5'- aUGCGCGCcgagccgaaucgcucAcCCGGCGgauaaaccagcgUUUCCCCUACa -3'
miRNA:   3'- cAUGUGCG---------------U-GGCCGU------------GAAGGGGAUGc -5'
30852 3' -56 NC_006552.1 + 44465 0.66 0.71095
Target:  5'- cUGCGCugccgGCGCCGGCAgacgCCCCagGCGu -3'
miRNA:   3'- cAUGUG-----CGUGGCCGUgaa-GGGGa-UGC- -5'
30852 3' -56 NC_006552.1 + 8533 0.66 0.689684
Target:  5'- -gACGCGCACCGGCuuGCUg-UCC-ACGu -3'
miRNA:   3'- caUGUGCGUGGCCG--UGAagGGGaUGC- -5'
30852 3' -56 NC_006552.1 + 49092 0.66 0.689684
Target:  5'- -aACugGUgccGCCGGCACcgcugCCCC-ACGu -3'
miRNA:   3'- caUGugCG---UGGCCGUGaa---GGGGaUGC- -5'
30852 3' -56 NC_006552.1 + 49262 0.67 0.678964
Target:  5'- uGUACugGCACgGGCuGCggCgCUUACGu -3'
miRNA:   3'- -CAUGugCGUGgCCG-UGaaGgGGAUGC- -5'
30852 3' -56 NC_006552.1 + 19963 0.67 0.678964
Target:  5'- ---uGCGCAUCGaGCACgUCCgCCUugGc -3'
miRNA:   3'- caugUGCGUGGC-CGUGaAGG-GGAugC- -5'
30852 3' -56 NC_006552.1 + 53439 0.67 0.657407
Target:  5'- --cCGCGCACaggucGCGCUUCCCCgcaACa -3'
miRNA:   3'- cauGUGCGUGgc---CGUGAAGGGGa--UGc -5'
30852 3' -56 NC_006552.1 + 50840 0.67 0.64659
Target:  5'- --uCACGCccgccaauACgGGCACacCCCCUACGu -3'
miRNA:   3'- cauGUGCG--------UGgCCGUGaaGGGGAUGC- -5'
30852 3' -56 NC_006552.1 + 21177 0.67 0.63576
Target:  5'- cGgcCGCGUcgguGCCGGCACaUCCgCUACc -3'
miRNA:   3'- -CauGUGCG----UGGCCGUGaAGGgGAUGc -5'
30852 3' -56 NC_006552.1 + 26403 0.68 0.623843
Target:  5'- ---aGCGCGCCGGCaucggucACUUCCgCgaagGCGa -3'
miRNA:   3'- caugUGCGUGGCCG-------UGAAGGgGa---UGC- -5'
30852 3' -56 NC_006552.1 + 62958 0.68 0.592499
Target:  5'- -gACGCGCacgaacugGCCGGCGCcgUUCUUCUGCc -3'
miRNA:   3'- caUGUGCG--------UGGCCGUG--AAGGGGAUGc -5'
30852 3' -56 NC_006552.1 + 60808 0.68 0.592499
Target:  5'- cUGCACGCGCgCauCACcugCCCCUACGg -3'
miRNA:   3'- cAUGUGCGUG-GccGUGaa-GGGGAUGC- -5'
30852 3' -56 NC_006552.1 + 19419 0.69 0.539202
Target:  5'- -gGC-CGCAUCGGgACgaaCCCUACGg -3'
miRNA:   3'- caUGuGCGUGGCCgUGaagGGGAUGC- -5'
30852 3' -56 NC_006552.1 + 60886 0.69 0.528723
Target:  5'- uGUGCgGCGCACCGGCGCUggcauaUCggGCGg -3'
miRNA:   3'- -CAUG-UGCGUGGCCGUGAag----GGgaUGC- -5'
30852 3' -56 NC_006552.1 + 56420 0.76 0.206762
Target:  5'- -aGCACGCACCGGaCGCcgCCCUguggGCGa -3'
miRNA:   3'- caUGUGCGUGGCC-GUGaaGGGGa---UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.