Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30853 | 3' | -55.2 | NC_006552.1 | + | 51710 | 0.66 | 0.79214 |
Target: 5'- cAAGaccaGCGACgagAUugCCgcgaUGAUCGACCg -3' miRNA: 3'- cUUCg---CGCUGa--UGugGG----ACUGGCUGG- -5' |
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30853 | 3' | -55.2 | NC_006552.1 | + | 29129 | 0.7 | 0.539202 |
Target: 5'- aGAAcGCGCGuu----CCCUGACUGACCc -3' miRNA: 3'- -CUU-CGCGCugauguGGGACUGGCUGG- -5' |
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30853 | 3' | -55.2 | NC_006552.1 | + | 30158 | 0.7 | 0.560361 |
Target: 5'- -cAGUGUGACacCACCCUGAaCGAUCg -3' miRNA: 3'- cuUCGCGCUGauGUGGGACUgGCUGG- -5' |
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30853 | 3' | -55.2 | NC_006552.1 | + | 21588 | 0.69 | 0.571028 |
Target: 5'- uAGGCGCuaugcgGAUgcaccagcGCGCCCUGGCCGAUg -3' miRNA: 3'- cUUCGCG------CUGa-------UGUGGGACUGGCUGg -5' |
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30853 | 3' | -55.2 | NC_006552.1 | + | 36094 | 0.69 | 0.592499 |
Target: 5'- cGAAGCGcCGGCgucacccGCGCCCUG-CUGcgcGCCa -3' miRNA: 3'- -CUUCGC-GCUGa------UGUGGGACuGGC---UGG- -5' |
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30853 | 3' | -55.2 | NC_006552.1 | + | 54623 | 0.69 | 0.613017 |
Target: 5'- --uGCGCGAa---GCCCUGGgcucucuccccguCCGACCg -3' miRNA: 3'- cuuCGCGCUgaugUGGGACU-------------GGCUGG- -5' |
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30853 | 3' | -55.2 | NC_006552.1 | + | 19895 | 0.69 | 0.614099 |
Target: 5'- --uGCGCGccCUugACCUUGACauCGGCCu -3' miRNA: 3'- cuuCGCGCu-GAugUGGGACUG--GCUGG- -5' |
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30853 | 3' | -55.2 | NC_006552.1 | + | 26789 | 0.69 | 0.624926 |
Target: 5'- aGAGGCcCGcagUUGCGCCUUG-CCGGCCg -3' miRNA: 3'- -CUUCGcGCu--GAUGUGGGACuGGCUGG- -5' |
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30853 | 3' | -55.2 | NC_006552.1 | + | 50161 | 0.69 | 0.624926 |
Target: 5'- uGGAGCagGCGuACUGCGCgCUGGUCGGCUa -3' miRNA: 3'- -CUUCG--CGC-UGAUGUGgGACUGGCUGG- -5' |
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30853 | 3' | -55.2 | NC_006552.1 | + | 62564 | 0.7 | 0.518321 |
Target: 5'- -cAGCGCGACgaacuggACACgauCCUGGCuCGACa -3' miRNA: 3'- cuUCGCGCUGa------UGUG---GGACUG-GCUGg -5' |
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30853 | 3' | -55.2 | NC_006552.1 | + | 39511 | 0.71 | 0.48763 |
Target: 5'- aGAGCGuCGGCaACuuCCUGGCCGcCCa -3' miRNA: 3'- cUUCGC-GCUGaUGugGGACUGGCuGG- -5' |
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30853 | 3' | -55.2 | NC_006552.1 | + | 8016 | 0.71 | 0.484607 |
Target: 5'- cGAAGCGCGACaGCggugcauagcccucGCCCUGcaacugGgCGACCu -3' miRNA: 3'- -CUUCGCGCUGaUG--------------UGGGAC------UgGCUGG- -5' |
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30853 | 3' | -55.2 | NC_006552.1 | + | 55155 | 0.78 | 0.181201 |
Target: 5'- aGAAGCcCGACgGCACCCcGACCGugCu -3' miRNA: 3'- -CUUCGcGCUGaUGUGGGaCUGGCugG- -5' |
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30853 | 3' | -55.2 | NC_006552.1 | + | 61722 | 0.77 | 0.217831 |
Target: 5'- --cGCGCGGgUacGCGCCCUGGCCGAaguCCu -3' miRNA: 3'- cuuCGCGCUgA--UGUGGGACUGGCU---GG- -5' |
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30853 | 3' | -55.2 | NC_006552.1 | + | 19952 | 0.76 | 0.256691 |
Target: 5'- uAGGCGCGGcCUGCgcaucgagcacguccGCCUUGGCCGACUc -3' miRNA: 3'- cUUCGCGCU-GAUG---------------UGGGACUGGCUGG- -5' |
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30853 | 3' | -55.2 | NC_006552.1 | + | 10312 | 0.76 | 0.260611 |
Target: 5'- cGAAGuCGCuGACgaaaGCCCUGGCCGAgCCg -3' miRNA: 3'- -CUUC-GCG-CUGaug-UGGGACUGGCU-GG- -5' |
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30853 | 3' | -55.2 | NC_006552.1 | + | 54740 | 0.74 | 0.341271 |
Target: 5'- --uGUGCGACgGCGCCCUGcuccgcgacACCGACg -3' miRNA: 3'- cuuCGCGCUGaUGUGGGAC---------UGGCUGg -5' |
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30853 | 3' | -55.2 | NC_006552.1 | + | 43741 | 0.72 | 0.41042 |
Target: 5'- cGAGGCGCGACacGCGCCCcaGcCCGcCCa -3' miRNA: 3'- -CUUCGCGCUGa-UGUGGGa-CuGGCuGG- -5' |
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30853 | 3' | -55.2 | NC_006552.1 | + | 53997 | 0.72 | 0.438503 |
Target: 5'- cAGGCGCGug-GCccugGCCCUGGCCGcgaGCCg -3' miRNA: 3'- cUUCGCGCugaUG----UGGGACUGGC---UGG- -5' |
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30853 | 3' | -55.2 | NC_006552.1 | + | 28365 | 0.71 | 0.457823 |
Target: 5'- -uAGCGCGugUACAgCUUGACCucgGGCa -3' miRNA: 3'- cuUCGCGCugAUGUgGGACUGG---CUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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