miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30853 3' -55.2 NC_006552.1 + 26789 0.69 0.624926
Target:  5'- aGAGGCcCGcagUUGCGCCUUG-CCGGCCg -3'
miRNA:   3'- -CUUCGcGCu--GAUGUGGGACuGGCUGG- -5'
30853 3' -55.2 NC_006552.1 + 19895 0.69 0.614099
Target:  5'- --uGCGCGccCUugACCUUGACauCGGCCu -3'
miRNA:   3'- cuuCGCGCu-GAugUGGGACUG--GCUGG- -5'
30853 3' -55.2 NC_006552.1 + 54623 0.69 0.613017
Target:  5'- --uGCGCGAa---GCCCUGGgcucucuccccguCCGACCg -3'
miRNA:   3'- cuuCGCGCUgaugUGGGACU-------------GGCUGG- -5'
30853 3' -55.2 NC_006552.1 + 36094 0.69 0.592499
Target:  5'- cGAAGCGcCGGCgucacccGCGCCCUG-CUGcgcGCCa -3'
miRNA:   3'- -CUUCGC-GCUGa------UGUGGGACuGGC---UGG- -5'
30853 3' -55.2 NC_006552.1 + 21588 0.69 0.571028
Target:  5'- uAGGCGCuaugcgGAUgcaccagcGCGCCCUGGCCGAUg -3'
miRNA:   3'- cUUCGCG------CUGa-------UGUGGGACUGGCUGg -5'
30853 3' -55.2 NC_006552.1 + 30158 0.7 0.560361
Target:  5'- -cAGUGUGACacCACCCUGAaCGAUCg -3'
miRNA:   3'- cuUCGCGCUGauGUGGGACUgGCUGG- -5'
30853 3' -55.2 NC_006552.1 + 29129 0.7 0.539202
Target:  5'- aGAAcGCGCGuu----CCCUGACUGACCc -3'
miRNA:   3'- -CUU-CGCGCugauguGGGACUGGCUGG- -5'
30853 3' -55.2 NC_006552.1 + 62564 0.7 0.518321
Target:  5'- -cAGCGCGACgaacuggACACgauCCUGGCuCGACa -3'
miRNA:   3'- cuUCGCGCUGa------UGUG---GGACUG-GCUGg -5'
30853 3' -55.2 NC_006552.1 + 39511 0.71 0.48763
Target:  5'- aGAGCGuCGGCaACuuCCUGGCCGcCCa -3'
miRNA:   3'- cUUCGC-GCUGaUGugGGACUGGCuGG- -5'
30853 3' -55.2 NC_006552.1 + 8016 0.71 0.484607
Target:  5'- cGAAGCGCGACaGCggugcauagcccucGCCCUGcaacugGgCGACCu -3'
miRNA:   3'- -CUUCGCGCUGaUG--------------UGGGAC------UgGCUGG- -5'
30853 3' -55.2 NC_006552.1 + 28365 0.71 0.457823
Target:  5'- -uAGCGCGugUACAgCUUGACCucgGGCa -3'
miRNA:   3'- cuUCGCGCugAUGUgGGACUGG---CUGg -5'
30853 3' -55.2 NC_006552.1 + 53997 0.72 0.438503
Target:  5'- cAGGCGCGug-GCccugGCCCUGGCCGcgaGCCg -3'
miRNA:   3'- cUUCGCGCugaUG----UGGGACUGGC---UGG- -5'
30853 3' -55.2 NC_006552.1 + 43741 0.72 0.41042
Target:  5'- cGAGGCGCGACacGCGCCCcaGcCCGcCCa -3'
miRNA:   3'- -CUUCGCGCUGa-UGUGGGa-CuGGCuGG- -5'
30853 3' -55.2 NC_006552.1 + 54740 0.74 0.341271
Target:  5'- --uGUGCGACgGCGCCCUGcuccgcgacACCGACg -3'
miRNA:   3'- cuuCGCGCUGaUGUGGGAC---------UGGCUGg -5'
30853 3' -55.2 NC_006552.1 + 10312 0.76 0.260611
Target:  5'- cGAAGuCGCuGACgaaaGCCCUGGCCGAgCCg -3'
miRNA:   3'- -CUUC-GCG-CUGaug-UGGGACUGGCU-GG- -5'
30853 3' -55.2 NC_006552.1 + 19952 0.76 0.256691
Target:  5'- uAGGCGCGGcCUGCgcaucgagcacguccGCCUUGGCCGACUc -3'
miRNA:   3'- cUUCGCGCU-GAUG---------------UGGGACUGGCUGG- -5'
30853 3' -55.2 NC_006552.1 + 61722 0.77 0.217831
Target:  5'- --cGCGCGGgUacGCGCCCUGGCCGAaguCCu -3'
miRNA:   3'- cuuCGCGCUgA--UGUGGGACUGGCU---GG- -5'
30853 3' -55.2 NC_006552.1 + 55155 0.78 0.181201
Target:  5'- aGAAGCcCGACgGCACCCcGACCGugCu -3'
miRNA:   3'- -CUUCGcGCUGaUGUGGGaCUGGCugG- -5'
30853 3' -55.2 NC_006552.1 + 18332 0.8 0.134629
Target:  5'- -uGGCGCcGCUGCACCCUGggcugcuuGCUGACCa -3'
miRNA:   3'- cuUCGCGcUGAUGUGGGAC--------UGGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.