miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30853 5' -54.6 NC_006552.1 + 4821 0.66 0.783936
Target:  5'- -cGAUGCgcacgcgcaCAGGGCggUCGCGCaGCu -3'
miRNA:   3'- guCUACGaa-------GUCCUGuuGGCGCGgUG- -5'
30853 5' -54.6 NC_006552.1 + 39257 0.66 0.773904
Target:  5'- cCAGGgcaaUGCgaUCAGGugACAGCCaGCGCUGCc -3'
miRNA:   3'- -GUCU----ACGa-AGUCC--UGUUGG-CGCGGUG- -5'
30853 5' -54.6 NC_006552.1 + 2644 0.66 0.753409
Target:  5'- uGGcgGCccUUCuGGGCuaggGACCGCGCgGCg -3'
miRNA:   3'- gUCuaCG--AAGuCCUG----UUGGCGCGgUG- -5'
30853 5' -54.6 NC_006552.1 + 64618 0.66 0.747158
Target:  5'- -uGGUGCUcCAGcaccacgguacggccGACGcuguucGCCGCGCCGCc -3'
miRNA:   3'- guCUACGAaGUC---------------CUGU------UGGCGCGGUG- -5'
30853 5' -54.6 NC_006552.1 + 63068 0.66 0.742968
Target:  5'- cCAGGUGCUgggCAuGGcCAacGCCGuCGCCGa -3'
miRNA:   3'- -GUCUACGAa--GU-CCuGU--UGGC-GCGGUg -5'
30853 5' -54.6 NC_006552.1 + 49558 0.67 0.721758
Target:  5'- gGGAUGa-UguGGACAuACCGCgagcGCCACa -3'
miRNA:   3'- gUCUACgaAguCCUGU-UGGCG----CGGUG- -5'
30853 5' -54.6 NC_006552.1 + 26264 0.69 0.601084
Target:  5'- -cGGUaGCgucggCAGGAUGACCGUGgCCGCg -3'
miRNA:   3'- guCUA-CGaa---GUCCUGUUGGCGC-GGUG- -5'
30853 5' -54.6 NC_006552.1 + 10768 0.69 0.601084
Target:  5'- -cGGUGC-UCAGGGCAugCagauugGCGCCGa -3'
miRNA:   3'- guCUACGaAGUCCUGUugG------CGCGGUg -5'
30853 5' -54.6 NC_006552.1 + 65003 0.7 0.546485
Target:  5'- aAGggGaCUUCcccaaAGGGCGcaaguuugGCCGCGCCACu -3'
miRNA:   3'- gUCuaC-GAAG-----UCCUGU--------UGGCGCGGUG- -5'
30853 5' -54.6 NC_006552.1 + 14697 0.7 0.540028
Target:  5'- -uGAUGCUgcacgccacgagcgcUCAGGAaguuCAccAUCGCGCCGCg -3'
miRNA:   3'- guCUACGA---------------AGUCCU----GU--UGGCGCGGUG- -5'
30853 5' -54.6 NC_006552.1 + 15552 0.7 0.535738
Target:  5'- -cGAUugGCgUCGGGGCuugcuGCUGCGCCGCc -3'
miRNA:   3'- guCUA--CGaAGUCCUGu----UGGCGCGGUG- -5'
30853 5' -54.6 NC_006552.1 + 32133 0.71 0.493562
Target:  5'- aCAGcgGCUUgcCGGuGCAugCGCGCCAUu -3'
miRNA:   3'- -GUCuaCGAA--GUCcUGUugGCGCGGUG- -5'
30853 5' -54.6 NC_006552.1 + 8409 0.71 0.452972
Target:  5'- -cGAacUGC-UCGGGGCucagGCCGCGCCAg -3'
miRNA:   3'- guCU--ACGaAGUCCUGu---UGGCGCGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.