miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30854 5' -57.6 NC_006552.1 + 63990 0.66 0.628775
Target:  5'- -aCCUGGCCGccaaGGGCCuGGc--CGGCAc -3'
miRNA:   3'- cgGGACCGGU----UCCGG-CCuuuGCUGUa -5'
30854 5' -57.6 NC_006552.1 + 61444 0.66 0.628775
Target:  5'- cGCCCgGGCCGuacggcaauacgAGuGCCGGGAAacCGAUc- -3'
miRNA:   3'- -CGGGaCCGGU------------UC-CGGCCUUU--GCUGua -5'
30854 5' -57.6 NC_006552.1 + 37963 0.66 0.596374
Target:  5'- gGCCUUGGCCAGGGCgucuugcACGGCc- -3'
miRNA:   3'- -CGGGACCGGUUCCGgccuu--UGCUGua -5'
30854 5' -57.6 NC_006552.1 + 21613 0.66 0.585621
Target:  5'- cGCCCUGGCCGAuGuccaguuucCCGGucGCGAUu- -3'
miRNA:   3'- -CGGGACCGGUUcC---------GGCCuuUGCUGua -5'
30854 5' -57.6 NC_006552.1 + 12955 0.67 0.573836
Target:  5'- gGCCUUGGCCuggcggugcguucGAGGCCaGcAGcCGACAUc -3'
miRNA:   3'- -CGGGACCGG-------------UUCCGGcCuUU-GCUGUA- -5'
30854 5' -57.6 NC_006552.1 + 17015 0.67 0.543061
Target:  5'- cGCCUc--CCGGGGCCGGAAGCcgaGCAUg -3'
miRNA:   3'- -CGGGaccGGUUCCGGCCUUUGc--UGUA- -5'
30854 5' -57.6 NC_006552.1 + 26187 0.67 0.522155
Target:  5'- cGCCCgcgccaguaGGCCAGGugcuuGCCGGu--CGGCAUg -3'
miRNA:   3'- -CGGGa--------CCGGUUC-----CGGCCuuuGCUGUA- -5'
30854 5' -57.6 NC_006552.1 + 7304 0.67 0.522155
Target:  5'- uGCCCgGGCCAGGuCCGGuucGAACuGAUAg -3'
miRNA:   3'- -CGGGaCCGGUUCcGGCC---UUUG-CUGUa -5'
30854 5' -57.6 NC_006552.1 + 8259 0.68 0.511818
Target:  5'- uGUCCaGGCUAcGGUCGGugGCGGCGc -3'
miRNA:   3'- -CGGGaCCGGUuCCGGCCuuUGCUGUa -5'
30854 5' -57.6 NC_006552.1 + 27354 0.68 0.461525
Target:  5'- aGCCCcacccgGGCCAGGaGCCGGcAGACcaGCAg -3'
miRNA:   3'- -CGGGa-----CCGGUUC-CGGCC-UUUGc-UGUa -5'
30854 5' -57.6 NC_006552.1 + 7882 0.68 0.461525
Target:  5'- uGCCCUGGCuCAcgguGGcGCCaGGAAACG-CGc -3'
miRNA:   3'- -CGGGACCG-GU----UC-CGG-CCUUUGCuGUa -5'
30854 5' -57.6 NC_006552.1 + 3575 0.68 0.461525
Target:  5'- gGUgCUGGCCGAGccGCCGGcgcCGGCAg -3'
miRNA:   3'- -CGgGACCGGUUC--CGGCCuuuGCUGUa -5'
30854 5' -57.6 NC_006552.1 + 64446 0.69 0.442145
Target:  5'- cGgCCUGGCCGuggugGGGCUGGuggaGACAUu -3'
miRNA:   3'- -CgGGACCGGU-----UCCGGCCuuugCUGUA- -5'
30854 5' -57.6 NC_006552.1 + 51030 0.69 0.432629
Target:  5'- aGCgCCUGGCCGAuGCCGGcGAUcccgaGACAg -3'
miRNA:   3'- -CG-GGACCGGUUcCGGCCuUUG-----CUGUa -5'
30854 5' -57.6 NC_006552.1 + 32180 0.7 0.39045
Target:  5'- aGCaCCUcGGCCGAcuucagcaccggcauGGUCGGgcGCGACAUa -3'
miRNA:   3'- -CG-GGA-CCGGUU---------------CCGGCCuuUGCUGUA- -5'
30854 5' -57.6 NC_006552.1 + 53476 0.7 0.381642
Target:  5'- aCCUUGGCCGAGGCauacaagcacuucacCGGGGAgGACc- -3'
miRNA:   3'- cGGGACCGGUUCCG---------------GCCUUUgCUGua -5'
30854 5' -57.6 NC_006552.1 + 46538 0.7 0.367828
Target:  5'- cGCgCCUGGCCGAGGagauagagcgcaUGGcAACGACGg -3'
miRNA:   3'- -CG-GGACCGGUUCCg-----------GCCuUUGCUGUa -5'
30854 5' -57.6 NC_006552.1 + 44990 0.7 0.364428
Target:  5'- aGCCCUccucgcucucugcucGGCCAGGGCCuGcucAGCGGCGg -3'
miRNA:   3'- -CGGGA---------------CCGGUUCCGGcCu--UUGCUGUa -5'
30854 5' -57.6 NC_006552.1 + 58196 0.71 0.352702
Target:  5'- gGCCCUGGCCGAagccacgcuGcGCCGGGuggcuAAgGGCGUg -3'
miRNA:   3'- -CGGGACCGGUU---------C-CGGCCU-----UUgCUGUA- -5'
30854 5' -57.6 NC_006552.1 + 11735 0.71 0.344492
Target:  5'- gGCCUU-GCCGgugAGGCCGG-AGCGGCGa -3'
miRNA:   3'- -CGGGAcCGGU---UCCGGCCuUUGCUGUa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.