miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30858 3' -58.9 NC_006552.1 + 61640 0.66 0.599438
Target:  5'- uGGAugcCCGAgGCCGCCGGCCGGaCgUC-Ca -3'
miRNA:   3'- -UCU---GGCU-UGGCGGCCGGUCaG-AGaGc -5'
30858 3' -58.9 NC_006552.1 + 60154 0.66 0.599438
Target:  5'- aAGugCGGcagAUCGCCGGCCAGcaCUUcCGc -3'
miRNA:   3'- -UCugGCU---UGGCGGCCGGUCa-GAGaGC- -5'
30858 3' -58.9 NC_006552.1 + 35836 0.66 0.599438
Target:  5'- cAGcCUGAGCCGCCG-CCAGUUggUUGu -3'
miRNA:   3'- -UCuGGCUUGGCGGCcGGUCAGagAGC- -5'
30858 3' -58.9 NC_006552.1 + 36940 0.66 0.588935
Target:  5'- cAGACCGAACCaagucaGUCGGCuCAGgcgCacgCUCa -3'
miRNA:   3'- -UCUGGCUUGG------CGGCCG-GUCa--Ga--GAGc -5'
30858 3' -58.9 NC_006552.1 + 25554 0.66 0.587886
Target:  5'- cGGCCGAaguacucGCCaCCGGCCAGUacgCUg- -3'
miRNA:   3'- uCUGGCU-------UGGcGGCCGGUCAga-GAgc -5'
30858 3' -58.9 NC_006552.1 + 30782 0.66 0.566997
Target:  5'- uGACCGAGgaucguuUCGuCUGGCCAGUagcCUUUCGc -3'
miRNA:   3'- uCUGGCUU-------GGC-GGCCGGUCA---GAGAGC- -5'
30858 3' -58.9 NC_006552.1 + 42717 0.67 0.53809
Target:  5'- cGGAUCGAACUGCgGuGCCGGUacgaacacuccgcgCUCGa -3'
miRNA:   3'- -UCUGGCUUGGCGgC-CGGUCAga------------GAGC- -5'
30858 3' -58.9 NC_006552.1 + 44410 0.67 0.496741
Target:  5'- cGAUUGcGCUGCCGGCCGG-CgaaaccggCUCGa -3'
miRNA:   3'- uCUGGCuUGGCGGCCGGUCaGa-------GAGC- -5'
30858 3' -58.9 NC_006552.1 + 23332 0.67 0.496741
Target:  5'- uGGACCGuuAUCGCCGGCUgcuccugccGGUCg-UCGa -3'
miRNA:   3'- -UCUGGCu-UGGCGGCCGG---------UCAGagAGC- -5'
30858 3' -58.9 NC_006552.1 + 59468 0.68 0.45214
Target:  5'- cGGCUGAGCUGCUGGUgAGgcgccacuucggcgCUCUCa -3'
miRNA:   3'- uCUGGCUUGGCGGCCGgUCa-------------GAGAGc -5'
30858 3' -58.9 NC_006552.1 + 33126 0.68 0.439003
Target:  5'- uGGACCcAGCCGuuGGCCAG-CUUg-- -3'
miRNA:   3'- -UCUGGcUUGGCggCCGGUCaGAGagc -5'
30858 3' -58.9 NC_006552.1 + 3580 0.71 0.298744
Target:  5'- uGGCCGAGCCGCCGGCgccggCAGga-CUUGc -3'
miRNA:   3'- uCUGGCUUGGCGGCCG-----GUCagaGAGC- -5'
30858 3' -58.9 NC_006552.1 + 64639 0.71 0.29803
Target:  5'- cGGCCGAcgcuguucgccgcGCCGCCGGUCAG-CUUcgCGa -3'
miRNA:   3'- uCUGGCU-------------UGGCGGCCGGUCaGAGa-GC- -5'
30858 3' -58.9 NC_006552.1 + 457 0.74 0.20606
Target:  5'- uAGAUCGAAguCUGCCGGCgCAGcCUUUCGa -3'
miRNA:   3'- -UCUGGCUU--GGCGGCCG-GUCaGAGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.