miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30859 3' -55.8 NC_006552.1 + 3842 0.66 0.747485
Target:  5'- aCCUGAGCUGCCgaGGCUGaaGGGAa- -3'
miRNA:   3'- gGGACUUGGCGGa-CUGGCcgUUCUac -5'
30859 3' -55.8 NC_006552.1 + 33836 0.67 0.684565
Target:  5'- gCgUGaAACCGCCgaacUGGCCGccgaGCGGGAUGg -3'
miRNA:   3'- gGgAC-UUGGCGG----ACUGGC----CGUUCUAC- -5'
30859 3' -55.8 NC_006552.1 + 57503 0.68 0.609088
Target:  5'- gCCUGGGCCGCCcggUGAacgCGGCAAa--- -3'
miRNA:   3'- gGGACUUGGCGG---ACUg--GCCGUUcuac -5'
30859 3' -55.8 NC_006552.1 + 52954 0.68 0.587557
Target:  5'- gCCC---GCCGCCgGugCGGCAuccGGGUGc -3'
miRNA:   3'- -GGGacuUGGCGGaCugGCCGU---UCUAC- -5'
30859 3' -55.8 NC_006552.1 + 52232 0.69 0.576842
Target:  5'- gCCCUGGACaaCCUGGCCaacaGCAAGGg- -3'
miRNA:   3'- -GGGACUUGgcGGACUGGc---CGUUCUac -5'
30859 3' -55.8 NC_006552.1 + 64492 0.69 0.576842
Target:  5'- aCgCUG-GCgGCCUGGCaGGCGGGGUGc -3'
miRNA:   3'- -GgGACuUGgCGGACUGgCCGUUCUAC- -5'
30859 3' -55.8 NC_006552.1 + 28919 0.69 0.534494
Target:  5'- gCUCUGGAauCCgGCC-GGCuCGGCAAGGUGa -3'
miRNA:   3'- -GGGACUU--GG-CGGaCUG-GCCGUUCUAC- -5'
30859 3' -55.8 NC_006552.1 + 51839 0.7 0.503467
Target:  5'- -gCUGAccgACCGCCUGGCCuucgaGCAAGcgGa -3'
miRNA:   3'- ggGACU---UGGCGGACUGGc----CGUUCuaC- -5'
30859 3' -55.8 NC_006552.1 + 22508 0.71 0.463378
Target:  5'- aCCCcuaugaaguggUGGGCCGCCuugUGAUCGGCGAGc-- -3'
miRNA:   3'- -GGG-----------ACUUGGCGG---ACUGGCCGUUCuac -5'
30859 3' -55.8 NC_006552.1 + 59831 0.71 0.453617
Target:  5'- aCCUGAACCGCCgcuuuuccAUCGcGCAGGAg- -3'
miRNA:   3'- gGGACUUGGCGGac------UGGC-CGUUCUac -5'
30859 3' -55.8 NC_006552.1 + 65083 0.71 0.434437
Target:  5'- aCCUGGacGCCGCCggcGCCGGCAAa--- -3'
miRNA:   3'- gGGACU--UGGCGGac-UGGCCGUUcuac -5'
30859 3' -55.8 NC_006552.1 + 63990 0.72 0.406571
Target:  5'- aCCUGGccGCCaaggGCCUGGCCGGCAc---- -3'
miRNA:   3'- gGGACU--UGG----CGGACUGGCCGUucuac -5'
30859 3' -55.8 NC_006552.1 + 18344 0.74 0.306277
Target:  5'- aCCCUGGGCUGCUUGcugaccacgaagcGCCGGCGGaGUGu -3'
miRNA:   3'- -GGGACUUGGCGGAC-------------UGGCCGUUcUAC- -5'
30859 3' -55.8 NC_006552.1 + 3582 0.76 0.23919
Target:  5'- gCC-GAGCCGCCggcGCCGGCAGGAc- -3'
miRNA:   3'- gGGaCUUGGCGGac-UGGCCGUUCUac -5'
30859 3' -55.8 NC_006552.1 + 52930 0.77 0.210231
Target:  5'- cCCCUccGAACCGCCUGcGCCGGCGc---- -3'
miRNA:   3'- -GGGA--CUUGGCGGAC-UGGCCGUucuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.