miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30860 3' -59.7 NC_006552.1 + 31438 0.66 0.52658
Target:  5'- gAGuGACC-GGGCCaGCGAUccGGGaCGAc -3'
miRNA:   3'- gUC-CUGGaCCCGG-CGUUGuuCCC-GCU- -5'
30860 3' -59.7 NC_006552.1 + 12207 0.66 0.516382
Target:  5'- -cGGACCgcgcaGaGGCCuCAGCGcGGGCGGc -3'
miRNA:   3'- guCCUGGa----C-CCGGcGUUGUuCCCGCU- -5'
30860 3' -59.7 NC_006552.1 + 57151 0.66 0.486289
Target:  5'- cCGGGACCUGGcGgCGUuccuCAAGGGg-- -3'
miRNA:   3'- -GUCCUGGACC-CgGCGuu--GUUCCCgcu -5'
30860 3' -59.7 NC_006552.1 + 35422 0.67 0.457054
Target:  5'- -uGGcaGCCUGGGCCGCAGCcuucGCGu -3'
miRNA:   3'- guCC--UGGACCCGGCGUUGuuccCGCu -5'
30860 3' -59.7 NC_006552.1 + 61270 0.68 0.392758
Target:  5'- aGGGAagCUGGGCCGCAAaccCAuGGGUc- -3'
miRNA:   3'- gUCCUg-GACCCGGCGUU---GUuCCCGcu -5'
30860 3' -59.7 NC_006552.1 + 38181 0.68 0.392758
Target:  5'- -uGGugCUGGGaaCGUccuCGAGGGCGAc -3'
miRNA:   3'- guCCugGACCCg-GCGuu-GUUCCCGCU- -5'
30860 3' -59.7 NC_006552.1 + 34160 0.7 0.311723
Target:  5'- cCAGaGCCUGGccGCCcaGCAGCAGGGcGCGGu -3'
miRNA:   3'- -GUCcUGGACC--CGG--CGUUGUUCC-CGCU- -5'
30860 3' -59.7 NC_006552.1 + 57500 0.7 0.304355
Target:  5'- -uGGGCCUGGGCCGCcc----GGUGAa -3'
miRNA:   3'- guCCUGGACCCGGCGuuguucCCGCU- -5'
30860 3' -59.7 NC_006552.1 + 27385 0.7 0.283058
Target:  5'- gCAGG-CCgaacuguuugcGGGCCGUAAUAGGGGCc- -3'
miRNA:   3'- -GUCCuGGa----------CCCGGCGUUGUUCCCGcu -5'
30860 3' -59.7 NC_006552.1 + 33158 0.7 0.283058
Target:  5'- cCAGGACUcaUGGGaCUGCu-CGGGGGUGGu -3'
miRNA:   3'- -GUCCUGG--ACCC-GGCGuuGUUCCCGCU- -5'
30860 3' -59.7 NC_006552.1 + 56851 0.71 0.250211
Target:  5'- aGGGAUUcGGcagcGCCGCGGCGAGcGGCGAa -3'
miRNA:   3'- gUCCUGGaCC----CGGCGUUGUUC-CCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.