Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30862 | 3' | -58 | NC_006552.1 | + | 4414 | 0.7 | 0.343019 |
Target: 5'- gUGaCAGgGCCGGUGCCAcCACcauccGGCg -3' miRNA: 3'- aACgGUCgCGGCUACGGUaGUGa----CCG- -5' |
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30862 | 3' | -58 | NC_006552.1 | + | 5079 | 0.66 | 0.571751 |
Target: 5'- -aGCCAGCGCUaucgcaGCCAgaacggcgcccaacUCGCgGGCg -3' miRNA: 3'- aaCGGUCGCGGcua---CGGU--------------AGUGaCCG- -5' |
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30862 | 3' | -58 | NC_006552.1 | + | 5316 | 0.68 | 0.422203 |
Target: 5'- -cGCCAGuUGgUGAUGCCGa-ACUGGCc -3' miRNA: 3'- aaCGGUC-GCgGCUACGGUagUGACCG- -5' |
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30862 | 3' | -58 | NC_006552.1 | + | 7115 | 0.68 | 0.454848 |
Target: 5'- cUGCUcugcGGCGCCGAacaacuugccccagGCCAUCgACaGGCg -3' miRNA: 3'- aACGG----UCGCGGCUa-------------CGGUAG-UGaCCG- -5' |
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30862 | 3' | -58 | NC_006552.1 | + | 7230 | 0.68 | 0.441237 |
Target: 5'- cUGCCGcGgGCCugcGCCAUCaACUGGUg -3' miRNA: 3'- aACGGU-CgCGGcuaCGGUAG-UGACCG- -5' |
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30862 | 3' | -58 | NC_006552.1 | + | 8672 | 0.71 | 0.275113 |
Target: 5'- --uUCGGCGCCaGAUcaGCCGcaUCGCUGGCg -3' miRNA: 3'- aacGGUCGCGG-CUA--CGGU--AGUGACCG- -5' |
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30862 | 3' | -58 | NC_006552.1 | + | 10472 | 0.73 | 0.22417 |
Target: 5'- -aGCCAGCGCa-GUGCCGcCuuCUGGCa -3' miRNA: 3'- aaCGGUCGCGgcUACGGUaGu-GACCG- -5' |
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30862 | 3' | -58 | NC_006552.1 | + | 12943 | 0.66 | 0.553528 |
Target: 5'- -gGCCAGCGCgcugGCCuuggC-CUGGCg -3' miRNA: 3'- aaCGGUCGCGgcuaCGGua--GuGACCG- -5' |
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30862 | 3' | -58 | NC_006552.1 | + | 16796 | 0.74 | 0.191415 |
Target: 5'- -cGCCGGCuGCCacaGGUGCCAaCGCUGGa -3' miRNA: 3'- aaCGGUCG-CGG---CUACGGUaGUGACCg -5' |
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30862 | 3' | -58 | NC_006552.1 | + | 17984 | 0.67 | 0.50108 |
Target: 5'- -aGCCAacGCGuCCGggGCCAUCGgcGGUa -3' miRNA: 3'- aaCGGU--CGC-GGCuaCGGUAGUgaCCG- -5' |
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30862 | 3' | -58 | NC_006552.1 | + | 20957 | 0.67 | 0.521822 |
Target: 5'- -cGuCCGGCaCCGGgaugGCCGUCAUgcucGGCg -3' miRNA: 3'- aaC-GGUCGcGGCUa---CGGUAGUGa---CCG- -5' |
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30862 | 3' | -58 | NC_006552.1 | + | 24735 | 0.68 | 0.412872 |
Target: 5'- -aGCCGGCGCCGG-GCCu--GCUcGGUc -3' miRNA: 3'- aaCGGUCGCGGCUaCGGuagUGA-CCG- -5' |
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30862 | 3' | -58 | NC_006552.1 | + | 26710 | 0.67 | 0.521822 |
Target: 5'- -cGCCcagGGCGCCGAaGgCGUCGCcGuGCa -3' miRNA: 3'- aaCGG---UCGCGGCUaCgGUAGUGaC-CG- -5' |
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30862 | 3' | -58 | NC_006552.1 | + | 27625 | 0.66 | 0.574982 |
Target: 5'- gUGCUgaugcGCGCCGA-GCCGaaUCGCUcacccGGCg -3' miRNA: 3'- aACGGu----CGCGGCUaCGGU--AGUGA-----CCG- -5' |
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30862 | 3' | -58 | NC_006552.1 | + | 27868 | 0.68 | 0.450936 |
Target: 5'- aUGCCGGCGUCGAUGU--UCACgcccaugaUGcGCa -3' miRNA: 3'- aACGGUCGCGGCUACGguAGUG--------AC-CG- -5' |
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30862 | 3' | -58 | NC_006552.1 | + | 27916 | 0.68 | 0.422203 |
Target: 5'- aUGuCCGGCGCCcgGAUGCCuGUCGCguaaGGa -3' miRNA: 3'- aAC-GGUCGCGG--CUACGG-UAGUGa---CCg -5' |
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30862 | 3' | -58 | NC_006552.1 | + | 28153 | 0.68 | 0.412872 |
Target: 5'- -cGuCCGGCGCCaccgGAcGCCAUUGCaGGCg -3' miRNA: 3'- aaC-GGUCGCGG----CUaCGGUAGUGaCCG- -5' |
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30862 | 3' | -58 | NC_006552.1 | + | 30681 | 0.67 | 0.521822 |
Target: 5'- aUGUCGuCGagCGAUGCCG-CACUGGUg -3' miRNA: 3'- aACGGUcGCg-GCUACGGUaGUGACCG- -5' |
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30862 | 3' | -58 | NC_006552.1 | + | 32026 | 0.69 | 0.38566 |
Target: 5'- -gGCCAGCGCC-AUGUCAgcCAggGGCg -3' miRNA: 3'- aaCGGUCGCGGcUACGGUa-GUgaCCG- -5' |
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30862 | 3' | -58 | NC_006552.1 | + | 32673 | 0.68 | 0.431659 |
Target: 5'- -aGCCuGCGCgaucaccugcuUGGUGUCGUCGCcGGCc -3' miRNA: 3'- aaCGGuCGCG-----------GCUACGGUAGUGaCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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